gwid: Genome-Wide Identity-by-Descent

Methods and tools for the analysis of Genome Wide Identity-by-Descent ('gwid') mapping data, focusing on testing whether there is a higher occurrence of Identity-By-Descent (IBD) segments around potential causal variants in cases compared to controls, which is crucial for identifying rare variants. To enhance its analytical power, 'gwid' incorporates a Sliding Window Approach, allowing for the detection and analysis of signals from multiple Single Nucleotide Polymorphisms (SNPs).

Version: 0.2.0
Imports: data.table, gdsfmt, SNPRelate, Matrix, ggplot2, plotly, utils, stats, RcppRoll, methods, piggyback, shiny, lattice, grid
Suggests: knitr, magrittr, rmarkdown, testthat (≥ 3.0.0)
Published: 2024-06-10
DOI: 10.32614/CRAN.package.gwid
Author: Soroush Mahmoudiandehkordi [aut, cre], Steven J Schrodi [aut], Mehdi Maadooliat [aut]
Maintainer: Soroush Mahmoudiandehkordi <soroushmdg at>
License: MIT + file LICENSE
NeedsCompilation: no
Materials: README NEWS
CRAN checks: gwid results


Reference manual: gwid.pdf
Vignettes: gwid


Package source: gwid_0.2.0.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): gwid_0.2.0.tgz, r-oldrel (arm64): gwid_0.1.0.tgz, r-release (x86_64): gwid_0.2.0.tgz, r-oldrel (x86_64): gwid_0.1.0.tgz
Old sources: gwid archive


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