symphony: Efficient and Precise Single-Cell Reference Atlas Mapping

Implements the Symphony single-cell reference building and query mapping algorithms and additional functions described in Kang et al <>.

Version: 0.1.1
Depends: R (≥ 3.5)
Imports: methods, Rcpp, harmony, uwot, irlba, class, purrr, dplyr, ggplot2, stats, utils, magrittr, data.table, tibble, Matrix, tidyr, rlang, RColorBrewer, RANN
LinkingTo: Rcpp, RcppArmadillo
Suggests: knitr, rmarkdown, testthat, ggthemes, ggrastr, ggrepel
Published: 2023-01-16
DOI: 10.32614/CRAN.package.symphony
Author: Joyce Kang ORCID iD [aut, cre], Ilya Korsunsky ORCID iD [aut], Soumya Raychaudhuri ORCID iD [aut]
Maintainer: Joyce Kang <joyce_kang at>
License: GPL (≥ 3)
NeedsCompilation: yes
Materials: README
CRAN checks: symphony results


Reference manual: symphony.pdf
Vignettes: Quickstart PBMCs Tutorial


Package source: symphony_0.1.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): symphony_0.1.1.tgz, r-oldrel (arm64): symphony_0.1.1.tgz, r-release (x86_64): symphony_0.1.1.tgz, r-oldrel (x86_64): symphony_0.1.1.tgz
Old sources: symphony archive


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