pureseqtmr: Predict Transmembrane Protein Topology

Proteins reside in either the cell plasma or in the cell membrane. A membrane protein goes through the membrane at least once. Given the amino acid sequence of a membrane protein, the tool 'PureseqTM' (<https://github.com/PureseqTM/pureseqTM_package>, as described in "Efficient And Accurate Prediction Of Transmembrane Topology From Amino acid sequence only.", Wang, Qing, et al (2019), <doi:10.1101/627307>), can predict the topology of a membrane protein. This package allows one to use 'PureseqTM' from R.

Version: 1.4
Depends: R (≥ 3.5.0)
Imports: data.table, devtools, dplyr, ggplot2, Peptides, plyr, rappdirs, readr, stringr, tibble, Rcpp
LinkingTo: Rcpp
Suggests: testthat, knitr, markdown, rmarkdown, profvis
Published: 2023-04-06
DOI: 10.32614/CRAN.package.pureseqtmr
Author: Richèl J.C. Bilderbeek ORCID iD [aut, cre]
Maintainer: Richèl J.C. Bilderbeek <richel at richelbilderbeek.nl>
BugReports: https://github.com/richelbilderbeek/pureseqtmr/
License: GPL-3
URL: https://github.com/richelbilderbeek/pureseqtmr/
NeedsCompilation: yes
SystemRequirements: PureseqTM (https://github.com/PureseqTM/pureseqTM_package)
CRAN checks: pureseqtmr results


Reference manual: pureseqtmr.pdf
Vignettes: Demo


Package source: pureseqtmr_1.4.tar.gz
Windows binaries: r-devel: pureseqtmr_1.4.zip, r-release: pureseqtmr_1.4.zip, r-oldrel: pureseqtmr_1.4.zip
macOS binaries: r-release (arm64): pureseqtmr_1.4.tgz, r-oldrel (arm64): pureseqtmr_1.4.tgz, r-release (x86_64): pureseqtmr_1.4.tgz, r-oldrel (x86_64): pureseqtmr_1.4.tgz
Old sources: pureseqtmr archive


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