genio: Genetics Input/Output Functions

Implements readers and writers for file formats associated with genetics data. Reading and writing Plink BED/BIM/FAM and GCTA binary GRM formats is fully supported, including a lightning-fast BED reader and writer implementations. Other functions are 'readr' wrappers that are more constrained, user-friendly, and efficient for these particular applications; handles Plink and Eigenstrat tables (FAM, BIM, IND, and SNP files). There are also make functions for FAM and BIM tables with default values to go with simulated genotype data.

Version: 1.1.2
Imports: readr (≥ 2.0.0), tibble, dplyr, Rcpp
LinkingTo: Rcpp
Suggests: testthat, knitr, rmarkdown, BEDMatrix, snpStats, lobstr
Published: 2023-01-06
DOI: 10.32614/CRAN.package.genio
Author: Alejandro Ochoa ORCID iD [aut, cre]
Maintainer: Alejandro Ochoa <alejandro.ochoa at>
License: GPL-3
NeedsCompilation: yes
Materials: README NEWS
CRAN checks: genio results


Reference manual: genio.pdf
Vignettes: Read and write BED files with 'genio'


Package source: genio_1.1.2.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): genio_1.1.2.tgz, r-oldrel (arm64): genio_1.1.2.tgz, r-release (x86_64): genio_1.1.2.tgz, r-oldrel (x86_64): genio_1.1.2.tgz
Old sources: genio archive

Reverse dependencies:

Reverse imports: lit, modACDC
Reverse suggests: gcatest, lfa


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