genBaRcode: Analysis and Visualization Tools for Genetic Barcode Data

Provides the necessary functions to identify and extract a selection of already available barcode constructs (Cornils, K. et al. (2014) <doi:10.1093/nar/gku081>) and freely choosable barcode designs from next generation sequence (NGS) data. Furthermore, it offers the possibility to account for sequence errors, the calculation of barcode similarities and provides a variety of visualisation tools (Thielecke, L. et al. (2017) <doi:10.1038/srep43249>).

Version: 1.2.7
Depends: R (≥ 3.4)
Imports: methods, RColorBrewer, ape, ggnetwork, ggplot2, ggraph, igraph, network, phangorn, stringdist, visNetwork, reshape2, S4Vectors, shiny, ggtree, dplyr, VennDiagram, futile.logger, future, future.apply, tools, ShortRead, Biostrings
Suggests: BiocManager, testthat, knitr, rmarkdown
Published: 2023-12-11
DOI: 10.32614/CRAN.package.genBaRcode
Author: Lars Thielecke
Maintainer: Lars Thielecke <lars.thielecke at>
License: LGPL-2 | LGPL-2.1 | LGPL-3 [expanded from: LGPL]
NeedsCompilation: no
CRAN checks: genBaRcode results


Reference manual: genBaRcode.pdf
Vignettes: Introduction to the genBaRcode GUI
Introduction to genBaRcode


Package source: genBaRcode_1.2.7.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): genBaRcode_1.2.7.tgz, r-oldrel (arm64): genBaRcode_1.2.7.tgz, r-release (x86_64): genBaRcode_1.2.7.tgz, r-oldrel (x86_64): genBaRcode_1.2.7.tgz
Old sources: genBaRcode archive


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