fst4pg: Genetic Distance Segmentation for Population Genetics

Provides efficient methods to compute local and genome wide genetic distances (corresponding to the so called Hudson Fst parameters) through moment method, perform chromosome segmentation into homogeneous Fst genomic regions, and selection sweep detection for multi-population comparison. When multiple profile segmentation is required, the procedure can be parallelized using the future package.

Version: 1.0.0
Depends: R (≥ 2.10)
Imports: dplyr, fpopw, furrr, future, ggplot2, gplots, graphics, grDevices, purrr, rlang, scales, stats, stringr, tibble, tidyr, utils
Published: 2022-07-03
DOI: 10.32614/CRAN.package.fst4pg
Author: Tristan Mary-Huard ORCID iD [aut, cre], Guillem Rigaill ORCID iD [aut]
Maintainer: Tristan Mary-Huard <tristan.mary-huard at agroparistech.fr>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: fst4pg results


Reference manual: fst4pg.pdf


Package source: fst4pg_1.0.0.tar.gz
Windows binaries: r-devel: fst4pg_1.0.0.zip, r-release: fst4pg_1.0.0.zip, r-oldrel: fst4pg_1.0.0.zip
macOS binaries: r-release (arm64): fst4pg_1.0.0.tgz, r-oldrel (arm64): fst4pg_1.0.0.tgz, r-release (x86_64): fst4pg_1.0.0.tgz, r-oldrel (x86_64): fst4pg_1.0.0.tgz


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