eggCounts: Hierarchical Modelling of Faecal Egg Counts

An implementation of Bayesian hierarchical models for faecal egg count data to assess anthelmintic efficacy. Bayesian inference is done via MCMC sampling using 'Stan' <>.

Version: 2.4
Depends: R (≥ 3.4.0), Rcpp (≥ 0.12.0)
Imports: methods, utils, rstan (≥ 2.26), rstantools (≥ 2.3.1), boot, coda, numbers, lattice, rootSolve
LinkingTo: rstan (≥ 2.26), Rcpp (≥ 1.0.7), BH (≥ 1.75.0), StanHeaders (≥ 2.26.0), RcppEigen (≥, RcppParallel (≥ 5.1.4)
Suggests: eggCountsExtra, R.rsp, testthat
Published: 2023-10-14
DOI: 10.32614/CRAN.package.eggCounts
Author: Craig Wang ORCID iD [aut, cre], Michaela Paul [aut], Tea Isler [ctb], Reinhard Furrer ORCID iD [ctb], Trustees of Columbia University [cph] (src/init.cpp, tools/make_cc.R, R/stanmodels.R)
Maintainer: Craig Wang <craigwang247 at>
License: GPL (≥ 3)
NeedsCompilation: yes
SystemRequirements: GNU make
Citation: eggCounts citation info
Materials: NEWS
CRAN checks: eggCounts results


Reference manual: eggCounts.pdf
Vignettes: eggCounts: a Bayesian hierarchical toolkit to model faecal egg count reductions


Package source: eggCounts_2.4.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): eggCounts_2.4.tgz, r-oldrel (arm64): eggCounts_2.4.tgz, r-release (x86_64): eggCounts_2.4.tgz, r-oldrel (x86_64): eggCounts_2.4.tgz
Old sources: eggCounts archive


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