dyngen: A Multi-Modal Simulator for Spearheading Single-Cell Omics Analyses

A novel, multi-modal simulation engine for studying dynamic cellular processes at single-cell resolution. 'dyngen' is more flexible than current single-cell simulation engines. It allows better method development and benchmarking, thereby stimulating development and testing of novel computational methods. Cannoodt et al. (2021) <doi:10.1038/s41467-021-24152-2>.

Version: 1.0.5
Depends: R (≥ 3.5.0)
Imports: assertthat, dplyr, dynutils (≥ 1.0.10), ggplot2, ggraph (≥ 2.0), ggrepel, GillespieSSA2 (≥ 0.2.6), grDevices, grid, igraph, lmds, Matrix, methods, patchwork, pbapply, purrr, rlang (≥ 0.4.1), stats, tibble, tidygraph, tidyr, utils, viridis
Suggests: anndata, covr, dynwrap (≥ 1.2.0), R.rsp, rmarkdown, Seurat, SingleCellExperiment (≥ 1.5.3), SummarizedExperiment, testthat
Published: 2022-10-12
DOI: 10.32614/CRAN.package.dyngen
Author: Robrecht Cannoodt ORCID iD [aut, cre, cph], Wouter Saelens ORCID iD [aut]
Maintainer: Robrecht Cannoodt <rcannood at gmail.com>
BugReports: https://github.com/dynverse/dyngen/issues
License: MIT + file LICENSE
URL: https://dyngen.dynverse.org, https://github.com/dynverse/dyngen
NeedsCompilation: no
Citation: dyngen citation info
Materials: README NEWS
CRAN checks: dyngen results


Reference manual: dyngen.pdf
Vignettes: Getting started
Installation instructions


Package source: dyngen_1.0.5.tar.gz
Windows binaries: r-devel: dyngen_1.0.5.zip, r-release: dyngen_1.0.5.zip, r-oldrel: dyngen_1.0.5.zip
macOS binaries: r-release (arm64): dyngen_1.0.5.tgz, r-oldrel (arm64): dyngen_1.0.5.tgz, r-release (x86_64): dyngen_1.0.5.tgz, r-oldrel (x86_64): dyngen_1.0.5.tgz
Old sources: dyngen archive


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