bigsnpr: Analysis of Massive SNP Arrays

Easy-to-use, efficient, flexible and scalable tools for analyzing massive SNP arrays. Privé et al. (2018) <doi:10.1093/bioinformatics/bty185>.

Version: 1.12.2
Depends: R (≥ 3.4), bigstatsr (≥ 1.5.11)
Imports: bigassertr (≥ 0.1.6), bigparallelr, bigsparser (≥ 0.6), bigreadr, bigutilsr (≥ 0.3.3), data.table (≥ 1.12.4), doRNG, foreach, ggplot2, magrittr, Matrix (≥ 1.3.0), methods, Rcpp, runonce (≥ 0.2.3), stats, vctrs
LinkingTo: bigsparser, bigstatsr, Rcpp, RcppArmadillo (≥ 0.9.600), rmio, roptim (≥ 0.1.6)
Suggests: bindata, covr, dbplyr (≥ 1.4), dplyr, gaston, glue, Hmisc, microbenchmark, pcadapt (≥ 4.1), quadprog, RhpcBLASctl, rmutil, RSpectra, RSQLite, R.utils, spelling, testthat, tibble, xgboost
Published: 2023-03-28
DOI: 10.32614/CRAN.package.bigsnpr
Author: Florian Privé [aut, cre], Michael Blum [ths], Hugues Aschard [ths], Bjarni Jóhann Vilhjálmsson [ths]
Maintainer: Florian Privé <florian.prive.21 at>
License: GPL-3
NeedsCompilation: yes
SystemRequirements: C++11. Also a few functions from package 'bigsnpr' wrap existing software such as 'PLINK' <>. Functions are provided to download these software. Note that these external software might not work for some operating systems (e.g. 'PLINK' might not work on Solaris).
Language: en-US
Citation: bigsnpr citation info
Materials: README NEWS
CRAN checks: bigsnpr results


Reference manual: bigsnpr.pdf


Package source: bigsnpr_1.12.2.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): bigsnpr_1.12.2.tgz, r-oldrel (arm64): bigsnpr_1.12.2.tgz, r-release (x86_64): bigsnpr_1.12.2.tgz, r-oldrel (x86_64): bigsnpr_1.12.2.tgz
Old sources: bigsnpr archive

Reverse dependencies:

Reverse imports: locStra, PRSPGx, RapidoPGS


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