agvgd: An R Implementation of the 'Align-GVGD' Method

'Align-GVGD' ('A-GVGD') is a method to predict the impact of 'missense' substitutions based on the properties of amino acid side chains and protein multiple sequence alignments <doi:10.1136/jmg.2005.033878>. 'A-GVGD' is an extension of the original 'Grantham' distance to multiple sequence alignments. This package provides an alternative R implementation to the web version found on <>.

Version: 0.1.2
Depends: R (≥ 2.10)
Imports: crayon, dplyr, glue, grantham, magrittr, purrr, rlang, seqinr, stringr, tibble, tidyr, vctrs
Suggests: rmarkdown, covr, testthat (≥ 3.0.0)
Published: 2022-09-10
DOI: 10.32614/CRAN.package.agvgd
Author: Ramiro Magno ORCID iD [aut, cre], Isabel Duarte ORCID iD [aut], Ana-Teresa Maia ORCID iD [aut], CINTESIS [cph, fnd]
Maintainer: Ramiro Magno <ramiro.magno at>
License: MIT + file LICENSE
NeedsCompilation: no
Materials: README NEWS
In views: Omics
CRAN checks: agvgd results


Reference manual: agvgd.pdf


Package source: agvgd_0.1.2.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): agvgd_0.1.2.tgz, r-oldrel (arm64): agvgd_0.1.2.tgz, r-release (x86_64): agvgd_0.1.2.tgz, r-oldrel (x86_64): agvgd_0.1.2.tgz
Old sources: agvgd archive


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