SIPmg: Statistical Analysis to Identify Isotope Incorporating MAGs

Statistical analysis as part of a stable isotope probing (SIP) metagenomics study to identify isotope incorporating taxa recovered as metagenome-assembled genomes (MAGs). Helpful reading and a vignette in bookdown format is provided on the package site <>.

Version: 1.4.1
Depends: R (≥ 3.5.0)
Imports: HTSSIP, dplyr, lazyeval, phyloseq, plyr, stringr, tibble, tidyr, magrittr, ggplot2, ggpubr, purrr, rlang, MASS, DESeq2, data.table, utils
Suggests: rmarkdown, knitr, EBImage, readr, BiocManager
Published: 2023-02-22
DOI: 10.32614/CRAN.package.SIPmg
Author: Pranav Sampara [aut, cre], Kate Waring [ctb], Ryan Ziels [aut]
Maintainer: Pranav Sampara <pranav.sai.4 at>
License: GPL-2
NeedsCompilation: yes
CRAN checks: SIPmg results


Reference manual: SIPmg.pdf
Vignettes: SIPmg-vignette


Package source: SIPmg_1.4.1.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): SIPmg_1.4.1.tgz, r-oldrel (arm64): SIPmg_1.4.1.tgz, r-release (x86_64): SIPmg_1.4.1.tgz, r-oldrel (x86_64): SIPmg_1.4.1.tgz
Old sources: SIPmg archive


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