RTIGER: HMM-Based Model for Genotyping and Cross-Over Identification

Our method integrates information from all sequenced samples, thus avoiding loss of alleles due to low coverage. Moreover, it increases the statistical power to uncover sequencing or alignment errors <doi:10.1093/plphys/kiad191>.

Version: 2.1.0
Depends: R (≥ 3.6), GenomicRanges, GenomeInfoDb
Imports: methods, e1071, extraDistr, reshape2, ggplot2, TailRank, JuliaCall, IRanges, qpdf, grDevices, graphics, stats, utils
Suggests: knitr, rmarkdown, markdown, Gviz, rtracklayer
Published: 2023-03-29
DOI: 10.32614/CRAN.package.RTIGER
Author: Rafael Campos-Martin ORCID iD [cre], Sophia Schmickler [aut], Manish Goel [ctb], Korbinian Schneeberger [aut], Achim Tresch [aut]
Maintainer: Rafael Campos-Martin <rfael.mpi at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Materials: README
CRAN checks: RTIGER results


Reference manual: RTIGER.pdf
Vignettes: tutorial_RTIGER


Package source: RTIGER_2.1.0.tar.gz
Windows binaries: r-devel: RTIGER_2.1.0.zip, r-release: RTIGER_2.1.0.zip, r-oldrel: RTIGER_2.1.0.zip
macOS binaries: r-release (arm64): RTIGER_2.1.0.tgz, r-oldrel (arm64): RTIGER_2.1.0.tgz, r-release (x86_64): RTIGER_2.1.0.tgz, r-oldrel (x86_64): RTIGER_2.1.0.tgz
Old sources: RTIGER archive


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