Last updated on 2025-02-06 05:49:23 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.12.35 | 14.81 | 254.13 | 268.94 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.12.35 | 11.64 | 190.10 | 201.74 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.12.35 | 446.72 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.12.35 | 463.15 | OK | |||
| r-devel-windows-x86_64 | 0.12.35 | 16.00 | 346.00 | 362.00 | OK | |
| r-patched-linux-x86_64 | 0.12.35 | 14.64 | 229.29 | 243.93 | ERROR | |
| r-release-linux-x86_64 | 0.12.35 | 13.51 | 254.05 | 267.56 | OK | |
| r-release-macos-arm64 | 0.12.35 | 151.00 | OK | |||
| r-release-macos-x86_64 | 0.12.35 | 227.00 | OK | |||
| r-release-windows-x86_64 | 0.12.35 | 14.00 | 331.00 | 345.00 | OK | |
| r-oldrel-macos-arm64 | 0.12.35 | 162.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.12.35 | 365.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.12.35 | 19.00 | 370.00 | 389.00 | OK |
Version: 0.12.35
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘finemapping.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_files/figure-html/unnamed-chunk-4-1.png
600x360 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 4805 bytes
Input file size = 5660 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4133
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4088
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4088
Output IDAT size = 4088 bytes (717 bytes decrease)
Output file size = 4166 bytes (1494 bytes = 26.40% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_files/figure-html/unnamed-chunk-6-1.png
600x360 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12685 bytes
Input file size = 12775 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9965
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9965
Output IDAT size = 9965 bytes (2720 bytes decrease)
Output file size = 10043 bytes (2732 bytes = 21.39% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_files/figure-html/unnamed-chunk-11-1.png
600x360 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11978 bytes
Input file size = 12068 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9574
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9574
Output IDAT size = 9574 bytes (2404 bytes decrease)
Output file size = 9652 bytes (2416 bytes = 20.02% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_files/figure-html/unnamed-chunk-13-1.png
600x360 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12197 bytes
Input file size = 12287 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9652
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9652
Output IDAT size = 9652 bytes (2545 bytes decrease)
Output file size = 9730 bytes (2557 bytes = 20.81% decrease)
--- finished re-building ‘finemapping.Rmd’
--- re-building ‘finemapping_summary_statistics.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_summary_statistics_files/figure-html/unnamed-chunk-4-1.png
600x360 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 4805 bytes
Input file size = 5660 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4133
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4088
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4088
Output IDAT size = 4088 bytes (717 bytes decrease)
Output file size = 4166 bytes (1494 bytes = 26.40% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_summary_statistics_files/figure-html/unnamed-chunk-6-1.png
600x360 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12685 bytes
Input file size = 12775 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9965
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9965
Output IDAT size = 9965 bytes (2720 bytes decrease)
Output file size = 10043 bytes (2732 bytes = 21.39% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_summary_statistics_files/figure-html/unnamed-chunk-10-1.png
600x360 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11978 bytes
Input file size = 12068 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9574
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9574
Output IDAT size = 9574 bytes (2404 bytes decrease)
Output file size = 9652 bytes (2416 bytes = 20.02% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_summary_statistics_files/figure-html/unnamed-chunk-13-1.png
420x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 6821 bytes
Input file size = 7679 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5926
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5909
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5909
Output IDAT size = 5909 bytes (912 bytes decrease)
Output file size = 5987 bytes (1692 bytes = 22.03% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_summary_statistics_files/figure-html/unnamed-chunk-17-1.png
600x360 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11420 bytes
Input file size = 11510 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9111
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9111
Output IDAT size = 9111 bytes (2309 bytes decrease)
Output file size = 9189 bytes (2321 bytes = 20.17% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_summary_statistics_files/figure-html/unnamed-chunk-18-1.png
420x480 pixels, 8 bits/pixel, 255 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5937 bytes
Input file size = 6792 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 5294
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5285
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 5285
Output IDAT size = 5285 bytes (652 bytes decrease)
Output file size = 5363 bytes (1429 bytes = 21.04% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/finemapping_summary_statistics_files/figure-html/unnamed-chunk-19-1.png
600x360 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11794 bytes
Input file size = 11884 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9308
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9308
Output IDAT size = 9308 bytes (2486 bytes decrease)
Output file size = 9386 bytes (2498 bytes = 21.02% decrease)
--- finished re-building ‘finemapping_summary_statistics.Rmd’
--- re-building ‘mwe.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/mwe_files/figure-html/unnamed-chunk-1-1.png
540x360 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 5229 bytes
Input file size = 6087 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 4613
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4603
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 4603
Output IDAT size = 4603 bytes (626 bytes decrease)
Output file size = 4681 bytes (1406 bytes = 23.10% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/mwe_files/figure-html/unnamed-chunk-2-1.png
420x420 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 7267 bytes
Input file size = 8125 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6275
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6232
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 6232
Output IDAT size = 6232 bytes (1035 bytes decrease)
Output file size = 6310 bytes (1815 bytes = 22.34% decrease)
--- finished re-building ‘mwe.Rmd’
--- re-building ‘sparse_susie_eval.Rmd’ using rmarkdown
--- finished re-building ‘sparse_susie_eval.Rmd’
--- re-building ‘susie_refine.Rmd’ using rmarkdown
Quitting from lines 24-33 [unnamed-chunk-1] (susie_refine.Rmd)
Error: processing vignette 'susie_refine.Rmd' failed with diagnostics:
Timeout was reached [raw.githubusercontent.com]: Connection timed out after 10001 milliseconds
--- failed re-building ‘susie_refine.Rmd’
--- re-building ‘susie_rss.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/susie_rss_files/figure-html/first-comparison-1.png
360x420 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11593 bytes
Input file size = 11683 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9137
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9137
Output IDAT size = 9137 bytes (2456 bytes decrease)
Output file size = 9215 bytes (2468 bytes = 21.12% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/susie_rss_files/figure-html/second-comparison-1.png
720x420 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 18198 bytes
Input file size = 18300 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14435
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14435
Output IDAT size = 14435 bytes (3763 bytes decrease)
Output file size = 14513 bytes (3787 bytes = 20.69% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/susie_rss_files/figure-html/third-comparison-1.png
360x420 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11191 bytes
Input file size = 11281 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8700
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8700
Output IDAT size = 8700 bytes (2491 bytes decrease)
Output file size = 8778 bytes (2503 bytes = 22.19% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/susie_rss_files/figure-html/fourth-comparison-1.png
360x420 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12532 bytes
Input file size = 12622 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9672
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9672
Output IDAT size = 9672 bytes (2860 bytes decrease)
Output file size = 9750 bytes (2872 bytes = 22.75% decrease)
--- finished re-building ‘susie_rss.Rmd’
--- re-building ‘susierss_diagnostic.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/susierss_diagnostic_files/figure-html/unnamed-chunk-2-1.png
600x360 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12685 bytes
Input file size = 12775 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9965
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9965
Output IDAT size = 9965 bytes (2720 bytes decrease)
Output file size = 10043 bytes (2732 bytes = 21.39% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/susierss_diagnostic_files/figure-html/unnamed-chunk-4-1.png
600x360 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 8588 bytes
Input file size = 9458 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7727
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7727
Output IDAT size = 7727 bytes (861 bytes decrease)
Output file size = 7805 bytes (1653 bytes = 17.48% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/susierss_diagnostic_files/figure-html/unnamed-chunk-5-1.png
600x360 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11978 bytes
Input file size = 12068 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9574
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 9574
Output IDAT size = 9574 bytes (2404 bytes decrease)
Output file size = 9652 bytes (2416 bytes = 20.02% decrease)
Quitting from lines 100-114 [unnamed-chunk-6] (susierss_diagnostic.Rmd)
Error: processing vignette 'susierss_diagnostic.Rmd' failed with diagnostics:
Timeout was reached [raw.githubusercontent.com]: Connection timed out after 10001 milliseconds
--- failed re-building ‘susierss_diagnostic.Rmd’
--- re-building ‘trend_filtering.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/trend_filtering_files/figure-html/unnamed-chunk-2-1.png
540x360 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12725 bytes
Input file size = 12815 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10169
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10169
Output IDAT size = 10169 bytes (2556 bytes decrease)
Output file size = 10247 bytes (2568 bytes = 20.04% decrease)
** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/susieR.Rcheck/vign_test/susieR/vignettes/trend_filtering_files/figure-html/unnamed-chunk-3-1.png
540x360 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14802 bytes
Input file size = 14892 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11627
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11627
Output IDAT size = 11627 bytes (3175 bytes decrease)
Output file size = 11705 bytes (3187 bytes = 21.40% decrease)
--- finished re-building ‘trend_filtering.Rmd’
--- re-building ‘trendfiltering_derivations.Rnw’ using Sweave
--- finished re-building ‘trendfiltering_derivations.Rnw’
SUMMARY: processing the following files failed:
‘susie_refine.Rmd’ ‘susierss_diagnostic.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64