Last updated on 2025-06-07 05:49:36 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.5 | 15.09 | 122.32 | 137.41 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.5 | 10.96 | 87.96 | 98.92 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.5 | 213.68 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.5 | 213.78 | OK | |||
| r-devel-windows-x86_64 | 1.1.5 | 16.00 | 202.00 | 218.00 | ERROR | |
| r-patched-linux-x86_64 | 1.1.5 | 13.07 | 117.73 | 130.80 | OK | |
| r-release-linux-x86_64 | 1.1.5 | 12.87 | 117.09 | 129.96 | OK | |
| r-release-macos-arm64 | 1.1.5 | 106.00 | OK | |||
| r-release-macos-x86_64 | 1.1.5 | 177.00 | OK | |||
| r-release-windows-x86_64 | 1.1.5 | 14.00 | 161.00 | 175.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.5 | 118.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.1.5 | 130.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.1.5 | 20.00 | 169.00 | 189.00 | OK |
Version: 1.1.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'refseqR.Rmd' using rmarkdown
Quitting from refseqR.Rmd:109-111 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! HTTP failure: 500
{"error":"error forwarding request /entrez/eutils/efetch.fcgi?db=nuccore&rettype=gp&retmode=&id=XM_004487701&email=david.winter%40gmail.com&tool=rentrez","api-key":"129.217.207.203","type":"ip",
"status":"ok"}
---
Backtrace:
▆
1. ├─base::substr(toString(refseq_CDSseq(transcript)), 1, 60)
2. ├─base::toString(refseq_CDSseq(transcript))
3. └─refseqR::refseq_CDSseq(transcript)
4. └─refseqR::refseq_CDScoords(transcript)
5. └─rentrez::entrez_fetch(db = "nuccore", id = x, rettype = "gp")
6. ├─base::do.call(make_entrez_query, args)
7. └─rentrez (local) `<fn>`(...)
8. └─rentrez:::entrez_check(response)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'refseqR.Rmd' failed with diagnostics:
HTTP failure: 500
{"error":"error forwarding request /entrez/eutils/efetch.fcgi?db=nuccore&rettype=gp&retmode=&id=XM_004487701&email=david.winter%40gmail.com&tool=rentrez","api-key":"129.217.207.203","type":"ip",
"status":"ok"}
--- failed re-building 'refseqR.Rmd'
SUMMARY: processing the following file failed:
'refseqR.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-x86_64