CRAN Package Check Results for Package medfate

Last updated on 2025-03-13 14:52:36 CET.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	4.8.0	457.84	173.96	631.80	OK
r-devel-linux-x86_64-debian-gcc	4.8.0	297.78	110.93	408.71	OK
r-devel-linux-x86_64-fedora-clang	4.8.0			1073.25	OK
r-devel-linux-x86_64-fedora-gcc	4.8.0			1062.35	OK
r-devel-macos-arm64	4.8.0			131.00	OK
r-devel-macos-x86_64	4.8.0			239.00	OK
r-devel-windows-x86_64	4.8.0	343.00	209.00	552.00	ERROR
r-patched-linux-x86_64	4.8.0				OK
r-release-linux-x86_64	4.8.0	399.32	164.94	564.26	OK
r-release-macos-arm64	4.8.0			187.00	NOTE
r-release-macos-x86_64	4.8.0			222.00	NOTE
r-release-windows-x86_64	4.8.0	340.00	253.00	593.00	NOTE
r-oldrel-macos-arm64	4.7.0				NOTE
r-oldrel-macos-x86_64	4.8.0			239.00	NOTE
r-oldrel-windows-x86_64	4.8.0	449.00	313.00	762.00	NOTE

Check Details

Version: 4.8.0
Check: examples
Result: ERROR Running examples in 'medfate-Ex.R' failed The error most likely occurred in: > ### Name: plot.spwb_day > ### Title: Plots simulation results for one day > ### Aliases: plot.spwb_day plot.growth_day plot.pwb_day > > ### ** Examples > > #Load example daily meteorological data > data(examplemeteo) > > #Load example plot plant data > data(exampleforest) > > #Default species parameterization > data(SpParamsMED) > > #Define soil with default soil params (2 layers) > examplesoil <- defaultSoilParams(4) > > #Switch to 'Sperry' transpiration mode > control <- defaultControl("Sperry") > > #Enable subdaily results for plotting > control["subdailyResults"] <- TRUE > > #Initialize model inputs > x2 <- spwbInput(exampleforest,examplesoil, SpParamsMED, control) > > #Simulate one day only > d <- 100 > date <- examplemeteo$dates[d] > meteovec <- unlist(examplemeteo[d,]) > sd2 <- spwb_day(x2, date, meteovec, + latitude = 41.82592, elevation = 100, slope= 0, aspect = 0) Package 'meteoland' [ver. 2.2.3] Error in spwb_day(x2, date, meteovec, latitude = 41.82592, elevation = 100, : NA Idf Execution halted Flavor: r-devel-windows-x86_64

Version: 4.8.0
Check: tests
Result: ERROR Running 'testthat.R' [28s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(medfate) Package 'medfate' [ver. 4.8.0] > > test_check("medfate") Package 'meteoland' [ver. 2.2.3] c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf c++ error: NA Idf [ FAIL 10 | WARN 0 | SKIP 0 | PASS 453 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_growth.R:105:3'): growth can be run disabling output ─────────── Error in `medfate::growth_day(growthInput(exampleforest, examplesoil, SpParamsMED, control), date, meteovec, latitude = 41.82592, elevation = 100, slope = 0, aspect = 0, modifyInput = FALSE)`: NA Idf Backtrace: ▆ 1. ├─testthat::expect_s3_class(...) at test_growth.R:105:3 2. │ └─testthat::quasi_label(enquo(object), arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─medfate::growth_day(...) ── Error ('test_growth.R:120:3'): growth_day gives same result with inner and direct calls ── Error in `medfate::growth_day_inner(ic, x2, date, meteovec, latitude = 41.82592, elevation = 100, slope = 0, aspect = 0, modifyInput = FALSE)`: NA Idf Backtrace: ▆ 1. └─medfate::growth_day_inner(...) at test_growth.R:120:3 ── Error ('test_growth.R:156:3'): growth_day gives same result with inner and direct calls with general communication ── Error in `medfate::growth_day(x2d, date, meteovec, latitude = 41.82592, elevation = 100, slope = 0, aspect = 0, modifyInput = TRUE)`: NA Idf Backtrace: ▆ 1. └─medfate::growth_day(...) at test_growth.R:156:3 ── Error ('test_post_processing.R:148:5'): Can produce all advanced subdaily spwb plots ── Error in `t.default(ori)`: argument is not a matrix Backtrace: ▆ 1. ├─testthat::expect_s3_class(...) at test_post_processing.R:148:5 2. │ └─testthat::quasi_label(enquo(object), arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─base::plot(S2, "LeafPsi", subdaily = TRUE) 5. └─medfate::plot.spwb(S2, "LeafPsi", subdaily = TRUE) 6. └─medfate:::.plotsubdaily(...) 7. └─medfate:::.extractSubdaily(x, "SunlitLeaves$Psi", dates) 8. ├─base::t(ori) 9. └─base::t.default(ori) ── Error ('test_post_processing.R:216:5'): Can produce all advanced spwb_day plots ── Error in `spwb_day(x2, examplemeteo$dates[d1], unlist(examplemeteo[d1, ]), latitude = 41.82592, elevation = 100, slope = 0, aspect = 0)`: NA Idf Backtrace: ▆ 1. └─medfate::spwb_day(...) at test_post_processing.R:216:5 ── Error ('test_post_processing.R:345:5'): Can produce all advanced subdaily growth plots ── Error in `matrix(nrow = numDates * numSteps, ncol = ncols + 1)`: invalid 'ncol' value (too large or NA) Backtrace: ▆ 1. ├─testthat::expect_s3_class(...) at test_post_processing.R:345:5 2. │ └─testthat::quasi_label(enquo(object), arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─base::plot(G2, "GrossPhotosynthesis", subdaily = TRUE) 5. └─medfate::plot.growth(G2, "GrossPhotosynthesis", subdaily = TRUE) 6. └─medfate:::.plotsubdaily(...) 7. └─medfate:::.extractSubdaily(x, type, dates) 8. ├─base::data.frame(...) 9. └─base::matrix(nrow = numDates * numSteps, ncol = ncols + 1) ── Error ('test_post_processing.R:379:5'): Can produce all advanced growth_day plots ── Error in `growth_day(x2, examplemeteo$dates[d1], unlist(examplemeteo[d1, ]), latitude = 41.82592, elevation = 100, slope = 0, aspect = 0)`: NA Idf Backtrace: ▆ 1. └─medfate::growth_day(...) at test_post_processing.R:379:5 ── Error ('test_pre_processing.R:52:3'): Stomatal regulation plot can be shown ── <Rcpp::exception/C++Error/error/condition> Error: NA Idf Backtrace: ▆ 1. ├─testthat::expect_s3_class(...) at test_pre_processing.R:52:3 2. │ └─testthat::quasi_label(enquo(object), arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─medfate::transp_stomatalRegulationPlot(...) 5. └─medfate::transp_transpirationSperry(...) ── Error ('test_spwb.R:114:3'): spwb_day gives same result with inner and direct calls ── Error in `medfate::spwb_day(x2, date, meteovec, latitude = 41.82592, elevation = 100, slope = 0, aspect = 0, modifyInput = FALSE)`: NA Idf Backtrace: ▆ 1. └─medfate::spwb_day(...) at test_spwb.R:114:3 ── Error ('test_spwb.R:149:3'): spwb_day gives same result with inner and direct calls with general communication ── Error in `medfate::spwb_day_inner(ic, x2i, date, meteovec, latitude = 41.82592, elevation = 100, slope = 0, aspect = 0, modifyInput = TRUE)`: NA Idf Backtrace: ▆ 1. └─medfate::spwb_day_inner(...) at test_spwb.R:149:3 [ FAIL 10 | WARN 0 | SKIP 0 | PASS 453 ] Error: Test failures Execution halted Flavor: r-devel-windows-x86_64

Version: 4.8.0
Check: installed package size
Result: NOTE installed size is 52.7Mb sub-directories of 1Mb or more: libs 51.4Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 4.7.0
Check: installed package size
Result: NOTE installed size is 50.4Mb sub-directories of 1Mb or more: libs 49.1Mb Flavor: r-oldrel-macos-arm64