Last updated on 2024-05-02 04:00:16 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3.0 | 864.06 | 286.10 | 1150.16 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.3.0 | 822.05 | 256.37 | 1078.42 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.3.0 | 1456.80 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.3.0 | 1382.51 | ERROR | |||
| r-devel-windows-x86_64 | 1.3.0 | 668.00 | 273.00 | 941.00 | ERROR | |
| r-patched-linux-x86_64 | 1.3.0 | 697.04 | 331.72 | 1028.76 | ERROR | |
| r-release-linux-x86_64 | 1.3.0 | 769.58 | 329.21 | 1098.79 | ERROR | |
| r-release-macos-arm64 | 1.3.0 | 344.00 | NOTE | |||
| r-release-windows-x86_64 | 1.3.0 | 668.00 | 262.00 | 930.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.3.0 | 377.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.3.0 | 493.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.3.0 | 884.00 | 332.00 | 1216.00 | ERROR |
Version: 1.3.0
Check: for GNU extensions in Makefiles
Result: NOTE
GNU make is a SystemRequirements.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.3.0
Check: examples
Result: ERROR
Running examples in ‘expertsurv-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: expertsurv-package
> ### Title: Incorporating Expert Opinion with Parametric Survival Models
> ### Aliases: expertsurv-package expertsurv
> ### Keywords: Economic Evaluation Expert Health Modelling Opinion Survival
>
> ### ** Examples
>
> #Define expert opinion
> require("dplyr")
Loading required package: dplyr
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
> param_expert_example1 <- list()
> #1 timepoint and 2 experts with equal weight,
> #first a normal distribution, second a non-standard t-distribution with
> #3 degrees of freedom
>
> param_expert_example1[[1]] <- data.frame(dist = c("norm","t"),
+ wi = c(0.5,0.5), # Ensure Weights sum to 1
+ param1 = c(0.1,0.12),
+ param2 = c(0.05,0.05),
+ param3 = c(NA,3))
>
>
> timepoint_expert <- 14
>
> data2 <- data %>% rename(status = censored) %>% mutate(time2 = ifelse(time > 10, 10, time),
+ status2 = ifelse(time> 10, 0, status))
>
> example1 <- fit.models.expert(formula=Surv(time2,status2)~1,data=data2,
+ distr=c("wph", "gomp"),
+ method="mle",
+ pool_type = "log pool",
+ opinion_type = "survival",
+ times_expert = timepoint_expert,
+ param_expert = param_expert_example1)
Error in get(x, envir = ns, inherits = FALSE) :
object 'deriv.test' not found
Calls: fit.models.expert ... format_output_fit.models -> lapply -> lapply -> FUN -> runMLE
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.3.0
Check: installed package size
Result: NOTE
installed size is 10.3Mb
sub-directories of 1Mb or more:
doc 1.7Mb
libs 7.0Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.3.0
Check: dependencies in R code
Result: NOTE
Namespaces in Imports field not imported from:
‘RcppParallel’ ‘rstantools’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.3.0
Check: examples
Result: ERROR
Running examples in ‘expertsurv-Ex.R’ failed
The error most likely occurred in:
> ### Name: expertsurv-package
> ### Title: Incorporating Expert Opinion with Parametric Survival Models
> ### Aliases: expertsurv-package expertsurv
> ### Keywords: Economic Evaluation Expert Health Modelling Opinion Survival
>
> ### ** Examples
>
> #Define expert opinion
> require("dplyr")
Loading required package: dplyr
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
> param_expert_example1 <- list()
> #1 timepoint and 2 experts with equal weight,
> #first a normal distribution, second a non-standard t-distribution with
> #3 degrees of freedom
>
> param_expert_example1[[1]] <- data.frame(dist = c("norm","t"),
+ wi = c(0.5,0.5), # Ensure Weights sum to 1
+ param1 = c(0.1,0.12),
+ param2 = c(0.05,0.05),
+ param3 = c(NA,3))
>
>
> timepoint_expert <- 14
>
> data2 <- data %>% rename(status = censored) %>% mutate(time2 = ifelse(time > 10, 10, time),
+ status2 = ifelse(time> 10, 0, status))
>
> example1 <- fit.models.expert(formula=Surv(time2,status2)~1,data=data2,
+ distr=c("wph", "gomp"),
+ method="mle",
+ pool_type = "log pool",
+ opinion_type = "survival",
+ times_expert = timepoint_expert,
+ param_expert = param_expert_example1)
Error in get(x, envir = ns, inherits = FALSE) :
object 'deriv.test' not found
Calls: fit.models.expert ... format_output_fit.models -> lapply -> lapply -> FUN -> runMLE
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64