Last updated on 2024-12-26 03:49:47 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.0 | 9.58 | 132.11 | 141.69 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.0 | 6.91 | 92.66 | 99.57 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.0 | 245.94 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.0 | 239.47 | OK | |||
| r-devel-windows-x86_64 | 1.1.0 | 13.00 | 157.00 | 170.00 | OK | |
| r-patched-linux-x86_64 | 1.1.0 | 10.11 | 125.37 | 135.48 | OK | |
| r-release-linux-x86_64 | 1.1.0 | 10.34 | 123.36 | 133.70 | OK | |
| r-release-macos-arm64 | 1.1.0 | 69.00 | ERROR | |||
| r-release-macos-x86_64 | 1.1.0 | 105.00 | NOTE | |||
| r-release-windows-x86_64 | 1.1.0 | 14.00 | 151.00 | 165.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.1.0 | 7.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.1.0 | 151.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.1.0 | 17.00 | 187.00 | 204.00 | NOTE |
Version: 1.1.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘org.Mm.eg.db’
Flavors: r-release-macos-arm64, r-oldrel-macos-x86_64
Version: 1.1.0
Check: installed package size
Result: NOTE
installed size is 6.1Mb
sub-directories of 1Mb or more:
doc 2.3Mb
extdata 3.4Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.1.0
Check: examples
Result: ERROR
Running examples in ‘bulkAnalyseR-Ex.R’ failed
The error most likely occurred in:
> ### Name: DEanalysis
> ### Title: Perform differential expression (DE) analysis on an expression
> ### matrix
> ### Aliases: DEanalysis DEanalysis_edger DEanalysis_deseq2
>
> ### ** Examples
>
> expression.matrix.preproc <- as.matrix(read.csv(
+ system.file("extdata", "expression_matrix_preprocessed.csv", package = "bulkAnalyseR"),
+ row.names = 1
+ ))[1:100, 1:4]
>
> anno <- AnnotationDbi::select(
+ getExportedValue('org.Mm.eg.db', 'org.Mm.eg.db'),
+ keys = rownames(expression.matrix.preproc),
+ keytype = 'ENSEMBL',
+ columns = 'SYMBOL'
+ ) %>%
+ dplyr::distinct(ENSEMBL, .keep_all = TRUE) %>%
+ dplyr::mutate(NAME = ifelse(is.na(SYMBOL), ENSEMBL, SYMBOL))
Error in (function (cond) :
error in evaluating the argument 'x' in selecting a method for function 'select': there is no package called ‘org.Mm.eg.db’
Calls: %>% ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart
Execution halted
Flavor: r-release-macos-arm64
Version: 1.1.0
Check: package dependencies
Result: ERROR
Package required but not available: ‘GENIE3’
Package suggested but not available for checking: ‘org.Mm.eg.db’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-arm64