Alphabet	Alphabet
alphabet.dna	alphabet.dna
alphabet.dna.gap	alphabet.dna.gap
alphabet.protein	alphabet.protein
alphabet.protein.gap	alphabet.protein.gap
alphabet.rna	alphabet.rna
alphabet.rna.gap	alphabet.rna.gap
colorchart	colorchart
deprects	deprects
DLData	DLData
filter.by.conservation	filter.by.conservation
filter.by.dependencies	filter.by.dependencies
filter.by.gaps	filter.by.gaps
filterColumns	filterColumns
getDeps	getDeps
getDeps.data.frame	getDeps
getDeps.DLData	getDeps
getPWM	getPWM
getPWM.DLData	getPWM
logo	logo
partition	partition
partition.DLData	partition
plotBlocks	plotBlocks
plotBlocks.DLData	plotBlocks
plotBlocks.list	plotBlocks
plotDeparcs	plotDeparcs
plotDeplogo	plotDeplogo
plotDeplogo.DLData	plotDeplogo
plotDepmatrix	plotDepmatrix
replaceColors	replaceColors
replaceColors.DLData	replaceColors
revcom	revcom
revcom.DLData	revcom
subBoxes	subBoxes
subLines	subLines
suggestColors	suggestColors
suggestColors.DLData	suggestColors
summary.DLData	summary.DLData
