annotate | evaluate ramSearch, MSFinder mssearch, MSFinder Structure, MSFinder Formula, and findmain output to annotate spectra of ramclustR object |
annotation.summary | annotation.summary() |
assign.z | assign.z |
change.annotation | evaluate ramSearch, MSFinder mssearch, MSFinder Structure, MSFinder Formula, and findmain output to annotate spectra of ramclustR object |
cmpd.summary | cmpd.summary |
defineExperiment | defineExperiment |
do.findmain | do.findmain |
export.msfinder.formulas | export MSFinder formula prediction results in tabular format. |
exportDataset | exportDataset |
findfeature | findfeature |
findmass | findmass |
fooddb2msfinder | foodb2msfinder |
getData | getData |
getSmilesInchi | getSmilesInchi |
import.adap.kdb | import.adap.kdb |
import.msfinder.formulas | import.msfinder.formulas |
import.msfinder.mssearch | import.MSFinder.mssearch |
import.msfinder.structures | write.methods |
import.sirius | import.sirius |
impRamSearch | impRamSearch |
manual.annotation.template | manual.annotation.template |
mergeRCobjects | mergeRCobjects |
ramclustR | ramclustR |
rc.calibrate.ri | rc.cmpd.filter.cv |
rc.cmpd.filter.cv | rc.cmpd.filter.cv |
rc.cmpd.get.classyfire | getClassyFire |
rc.cmpd.get.pubchem | rc.cmpd.get.pubchem |
rc.cmpd.get.smiles.inchi | getSmilesInchi |
rc.cmpd.replace.na | rc.cmpd.replace.na |
rc.expand.sample.names | rc.expand.sample.names |
rc.export.msp.rc | rc.export.msp.rc |
rc.feature.filter.blanks | rc.feature.filter.blanks |
rc.feature.filter.cv | rc.feature.filter.cv |
rc.feature.normalize.qc | rc.feature.normalize.qc |
rc.feature.normalize.tic | rc.feature.normalize.tic |
rc.feature.replace.na | rc.feature.replace.na |
rc.get.xcms.data | rc.get.xcms.data |
rc.qc | rc.qc |
rc.ramclustr | rc.ramclustr |
rc.remove.qc | rc.remove.qc |
rc.restore.qc.samples | rc.restore.qc.samples |
RCQC | RCQC |
write.methods | write.methods |
write.msp | write.msp |