adjust_rate |
Adjust rates to account for background respiration or oxygen flux. |
adjust_rate.ft |
Adjust rates in flowthrough respirometry to account for background respiration or oxygen flux. |
algae.rd |
Oxygen production respirometry data |
auto_rate |
Automatically determine most linear, highest, lowest and rolling oxygen uptake or production rates |
background_con.rd |
Background respirometry data (constant) |
background_exp.rd |
Background respirometry data (exponential) |
background_lin.rd |
Background respirometry data (linear) |
calc_rate |
Calculate rate of change in oxygen over time |
calc_rate.bg |
Calculate background oxygen uptake or input rates |
calc_rate.ft |
Calculate rate of change in oxygen from flowthrough respirometry data |
convert_DO |
Convert between units of dissolved oxygen |
convert_rate |
Convert a unitless oxygen rate value to absolute, mass-specific or area-specific rate |
convert_rate.ft |
Convert a unitless oxygen rate value from flowthrough respirometry to absolute, mass-specific or area-specific rates |
convert_val |
Convert values of temperature, volume, mass, area, and atmospheric pressure to different units |
flowthrough.rd |
Flowthrough respirometry data on the chiton, _Mopalia lignosa_ |
flowthrough_mult.rd |
Multi-column flowthrough respirometry data |
flowthrough_sim.rd |
Flowthrough respirometry data with increasing background rate |
format_time |
Parse date-time data to numeric time for use in respR functions |
import_file |
Import respirometry system raw data files |
inspect |
Explore and visualise respirometry data and check for common errors |
inspect.ft |
Explore and visualise flowthrough respirometry data and check for errors |
intermittent.rd |
Respirometry data of the sea urchin, _Heliocidaris Erythrogramma_ |
mean.adjust_rate |
Average adjust_rate object rates |
mean.adjust_rate.ft |
Average adjust_rate.ft rates |
mean.auto_rate |
Average auto_rate object rates |
mean.calc_rate |
Average calc_rate object rates |
mean.calc_rate.bg |
Average calc_rate.bg object rates |
mean.calc_rate.ft |
Average calc_rate.ft object rates |
mean.convert_DO |
Average convert_DO object values |
mean.convert_rate |
Average convert_rate object rates |
mean.convert_rate.ft |
Average convert_rate.ft object rates |
mean.inspect |
Average inspect object rates |
mean.inspect.ft |
Average inspect.ft object rates |
mean.oxy_crit |
Average oxy_crit object rates |
oxy_crit |
Calculate critical oxygen values, such as PCrit |
plot.adjust_rate |
Plot adjust_rate objects |
plot.adjust_rate.ft |
Plot adjust_rate.ft objects |
plot.auto_rate |
Plot auto_rate objects |
plot.calc_rate |
Plot calc_rate objects |
plot.calc_rate.bg |
Plot calc_rate.bg objects |
plot.calc_rate.ft |
Plot calc_rate.ft objects |
plot.convert_DO |
Plot convert_DO objects |
plot.convert_rate |
Plot convert_rate objects |
plot.convert_rate.ft |
Plot convert_rate.ft objects |
plot.inspect |
Plot inspect objects |
plot.inspect.ft |
Plot inspect.ft objects |
plot.oxy_crit |
Plot oxy_crit objects |
plot_ar |
Plot auto_rate summary tables |
print.adjust_rate |
Print adjust_rate objects |
print.adjust_rate.ft |
Print adjust_rate.ft objects |
print.auto_rate |
Print auto_rate objects |
print.calc_rate |
Print calc_rate objects |
print.calc_rate.bg |
Print calc_rate.bg objects |
print.calc_rate.ft |
Print calc_rate.ft objects |
print.convert_DO |
Print convert_DO objects |
print.convert_rate |
Print convert_rate objects |
print.convert_rate.ft |
Print convert_rate.ft objects |
print.inspect |
Print inspect objects |
print.inspect.ft |
Print inspect.ft objects |
print.oxy_crit |
Print oxy_crit objects |
sardine.rd |
Respirometry data of the sardine, _Sardinops sagax_ |
squid.rd |
Respirometry data of the squid, _Doryteuthis opalescens_ |
subsample |
Subsample a data frame object |
subset_data |
Subset a 'data.frame', 'inspect', or 'inspect.ft' object |
subset_rate |
Subset auto_rate results based on a range of criteria |
summary.adjust_rate |
Summarise adjust_rate objects |
summary.adjust_rate.ft |
Summarise adjust_rate.ft objects |
summary.auto_rate |
Summarise auto_rate objects |
summary.calc_rate |
Summarise calc_rate objects |
summary.calc_rate.bg |
Summarise calc_rate.bg objects |
summary.calc_rate.ft |
Summarise calc_rate.ft objects |
summary.convert_DO |
Summarise convert_DO objects |
summary.convert_rate |
Summarise convert_rate objects |
summary.convert_rate.ft |
Summarise convert_rate.ft objects |
summary.inspect |
Summarise inspect objects |
summary.inspect.ft |
Summarise inspect.ft objects |
summary.oxy_crit |
Summarise oxy_crit objects |
test_lin_data |
Output objects for the function 'test_lin' |
unit_args |
Print examples of unit inputs for use in convert_DO, convert_rate, and convert_rate.ft |
urchins.rd |
Multi-column respirometry data of the sea urchin, _Heliocidaris Erythrogramma_, including background respiration |
zeb_intermittent.rd |
Respirometry data of a zebrafish, _Danio rerio_ |