Analyse Biological Time-Series Data


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Documentation for package ‘phase’ version 1.2.1

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allActograms Generate actograms
allActogramsWake Generate actograms for "wake" data
allPeriodogramsAct Periodogram analysis for activity data
allPeriodogramsSleep Periodogram analysis for sleep data
allPeriodogramsWake Periodogram analysis for "wake" data
allSomnograms Generate actograms for sleep data (Somnograms)
anticipationAct Compute anticipation for activity data
binData Bin activity data to desired intervals
CoM Objectively quantify and visualise phases and calculate consolidation in pre-defined time-windows
df Example DAM data
indActogram Plot actogram of individual fly
indActogramWake Generate actogram for "wake" data for individual fly
indPeriodogramAct Periodogram plot for activity data of individual flies
indPeriodogramSleep Periodogram plot for sleep data of individual flies
indPeriodogramWake Periodogram plot for "wake" data of individual flies
indSomnogram Generate actograms for sleep data (Somnograms) for individual flies
peakIdentifier Phase identifier for activity data
profilesAct Compute and plot activity profiles
profilesSleep Compute and plot sleep profiles
profilesWake Compute and plot "wake" profiles
rosePlotsAct Generate rose plots for averaged activity data
rosePlotsSleep Generate rose plots for averaged sleep data
rosePlotsWake Generate rose plots for averaged "wake" data
sleepData Equivalent of binData() but for sleep data
sleepOnsetBoutLength Computes, tabulates and plots day-time and night-time onset of sleep bouts and their respective lengths
sleepStat Computes and tabulates day-time and night-time sleep statistics
trimData Trim data for downstream analyses
wakeData Equivalent of binData() but for "wake" data