Parse and Manipulate Research Patient Data Registry ('RPDR') Text Queries

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Documentation for package ‘parseRPDR’ version 0.2.1

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all_ids_mi2b2 Creates a vector of all possible IDs for mi2b2 workbench
convert_dia Searches diagnosis columns for given diseases.
convert_enc Searches columns for given diseases defined by ICD codes.
convert_lab Converts lab results to normal/abnormal based-on reference values.
convert_med Adds boolean columns corresponding to a group of medications whether it is present in the given row.
convert_notes Extracts information from notes free text.
convert_phy Searches health history data for given codes
convert_prc Searches procedures columns for given procedures
convert_rfv Searches columns for given reason for visit defined by ERFV codes.
create_img_db Create a database of DICOM headers.
data_con Example of processed con.txt output from RPDR using the load_con() function.
data_con_raw Example of con.txt output from RPDR.
data_dem Example of processed dem.txt output from RPDR using the load_dem() function.
data_dem_raw Example of dem.txt output from RPDR.
data_dia Example of processed dia.txt output from RPDR using the load_dia() function.
data_dia_raw Example of dia.txt output from RPDR.
data_enc Example of processed enc.txt output from RPDR using the load_enc() function.
data_enc_raw Example of enc.txt output from RPDR.
data_lab Example of processed lab.txt output from RPDR using the load_lab() function.
data_lab_raw Example of lab.txt output from RPDR.
data_med Example of processed med.txt output from RPDR using the load_med() function.
data_med_raw Example of med.txt output from RPDR.
data_mrn Example of processed mrn.txt output from RPDR using the load_mrn() function.
data_mrn_raw Example of mrn.txt output from RPDR.
data_rad Example of processed rad.txt output from RPDR using the load_rad() function.
data_rad_raw Example of rad.txt output from RPDR.
data_rdt Example of processed rdt.txt output from RPDR using the load_rdt() function.
data_rdt_raw Example of rdt.txt output from RPDR.
find_exam Find exam data within a given timeframe using parallel CPU computing and possibly shared RAM management.
load_all Loads all RPDR text outputs into R.
load_con Loads contact information into R.
load_dem Loads demographic information into R.
load_dia Loads diagnoses into R.
load_enc Loads encounter information into R.
load_lab Loads laboratory results into R.
load_lno Loads LMR note documents into R.
load_med Loads medication order detail into R.
load_mrn Loads MRN data into R.
load_notes Loads note documents into R.
load_phy Loads helath history information into R.
load_prc Loads procedures into R.
load_rdt Loads radiology procedures data into R.
load_rfv Loads reason for visit data into R.
pretty_mrn Converts MRN integer to string compatible with RPDR.