Create and Evaluate NONMEM Models in a Project Context


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Documentation for package ‘nonmemica’ version 0.9.7

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absolute Check if File Path is Absolute
as.halfmatrix.default Coerce to Half Matrix by Default
as.matrix.halfmatrix Coerce Half Matrix to Matrix
as.xml_document Create an xml_document in a Project Context
as.xml_document.character Create an xml_document in a Project Context
as.xml_document.xml_document Create an xml_document in a Project Context
contains Check Whether Text Contains Pattern
datafile.character Identify the Datafile for a Model
definitions Harvest Model Item Definitions
definitions.character Harvest Model Item Definitions
definitions.definitions Harvest Model Item Definitions
depends.default Identify Model Dependencies
errors.character Get Errors for Character
estimates.character Get Estimates for Character
fixed.model Check If Model is Fixed
generalize Generalize a Nonmissing Value
initial.model Get Model Initial Estimates
initial<-.model Set Upper Bounds for Model Initial Estimates
likebut Modify a Model
lower.model Get Lower Bounds for Model Initial Estimates
lower<-.model Set Lower Bounds for Model Initial Estimates
meta.character Get Metadata for Character
metaplot.character Metaplot Character
metaplot_character Metaplot Character, Standard Evaluation
metasuperset Retrieve Model Outputs with Metadata
modeldir Identify the Directory for a Model
modelfile Identify the Modelfile for a Model
modelpath Resolve A Path to a Model-related File
modelpath.character Resolve A Path to a Model-related File for Character
ninput Calculate Number of Inputs
ninput.character Calculate Number of Inputs for Character
ninput.numeric Calculate Number of Inputs for Numeric
nms_canonical.character Generate Canonical Names for Character
nms_canonical.model Generate Canonical Names for Model
nms_nonmem.character Generate NONMEM-style Names for Character
nms_nonmem.model Generate NONMEM-style Names for Model
nms_psn.character Generate PsN-style Names for Character
nms_psn.model Generate PsN-style Names for Model
nonmemica Create and Evaluate NONMEM Models in a Project Context
offdiag.halfmatrix Isolate Off-diagonal of Half Matrix
parameters.character Get Parameters for Character
partab Create Parameter Table
partab.character Create a Parameter Table from Model Name
partab.partab Create Parameter Table
problem.character Identify the Model Problem Statement for Character
psn_nested PsN Model File is Nested Check whether a particular file extension corresponds to a file that is nested within a subdirectory using default PsN conventions.
psn_options Set PsN Options Sets PsN-style directory and control stream options. Supports control streams with semicolon-delimited metadata including symbol, unit, transform, and label. Expects model files to be found in nested directory, except for *.mod and *.lst.
relativizePath Relativize a Path
resolve Resolve File Path
runlog.character Create a Runlog for Character
safe_join Join Data Safely
safe_join.data.frame Join Data Frames Safely
shuffle Move the Columns of a Data Frame Relative to Each Other
specfile.character Identify the Data Specification File for a Model
superset.character Coerce to Superset from Character
superspec Create Specification for Model Inputs and Outputs
superspec.character Create Specification for Model Inputs and Outputs From Character
superspec.numeric Create Specification for Model Inputs and Outputs From Numeric
tad Calculate Time Since Most Recent Dose
tad1 A NONMEM-like Dataset
tod Calculate Time of Most Recent Dose
tweak.default Tweak a Model by Default
tweak.model Tweak Model
updated.character Create the Updated Version of Character
upper.model Get Upper Bounds for Model Initial Estimates
upper<-.model Set Upper Bounds for Model Initial Estimates
xpath Evaluate Xpath Expression
xpath.default Evaluate Xpath Expression
xpath.xml_document Evaluate Xpath Expression