Package for Sequence Analysis by Local Score


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Documentation for package ‘localScore’ version 1.0.6

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localScore-package Package for sequence analysis by local score
automatic_analysis Automatic analysis
CharSequence2ScoreSequence Convert a character sequence into a score sequence
CharSequences2ScoreSequences Convert several character sequences into score sequences
daudin Daudin [p-value] [iid]
dico Dictionnaire
exact_mc Exact method for p-value [Markov chains]
karlin Karlin [p-value] [iid]
karlinMonteCarlo Monte Carlo - Karlin [p-value]
karlinMonteCarlo_double Monte Carlo - Karlin for real scores[p-value]
lindley Lindley process
loadMatrixFromFile Loads matrix from csv-File
loadScoreFromFile Load score from file
localScore Package for sequence analysis by local score
localScoreC Local score
localScoreC_double Local score for sequences of floating values
LongSeq Long protein sequence
mcc MCC [p-value] [iid]
MidSeq Protein sequence
monteCarlo Monte Carlo method [p-value]
monteCarlo_double Monte Carlo method for real score case [p-value]
MySeqList Several sequences
RealScores2IntegerScores Convert a real scores vector into an integer scores vector
scoreDictionnary2probabilityVector Check for missing scores values in the score distribution
scoreSequences2probabilityVector Empirical distribution from sequences
sequences2transmatrix Transition matrix from sequence(s)
ShortSeq Short protein sequence
stationary_distribution Stationary distribution [Markov chains]
transmatrix2sequence Sampling function for Markov chains