AGRdiff |
Calculates growth rates (AGR, PGR, RGRdiff) between pairs of values in a vector |
anom |
Tests if any values in a vector are anomalous in being outside specified limits |
anomPlot |
Deprecated Functions in the Package asremlPlus |
calcLagged |
Replaces the values in a vector with the result of applying an operation to it and a lagged value |
calcTimes |
Calculates for a set of times, the time intervals after an origin time and the position of each within a time interval |
cart.dat |
A small data set to use in function examples |
corrPlot |
Deprecated Functions in the Package asremlPlus |
cumulate |
Calculates the cumulative sum, ignoring the first element if exclude.1st is TRUE |
designFactors |
Adds the factors and covariates for a blocked, split-plot design |
exampleData |
A small data set to use in function examples |
fitSpline |
Produce the fits from a natural cubic smoothing spline applied to a response in a 'data.frame', and growth rates can be computed using derivatives |
getDates |
Deprecated Functions in the Package asremlPlus |
getTimesSubset |
Forms a subset of 'responses' in 'data' that contains their values for the nominated times |
growthPheno |
Plotting, Smoothing and Growth Trait Extraction for Longitudinal Data |
growthPheno-deprecated |
Deprecated Functions in the Package asremlPlus |
growthPheno-pkg |
Plotting, Smoothing and Growth Trait Extraction for Longitudinal Data |
GrowthRates |
Calculates growth rates (AGR, PGR, RGRdiff) between pairs of values in a vector |
imagetimesPlot |
Deprecated Functions in the Package asremlPlus |
importExcel |
Imports an Excel imaging file and allows some renaming of variables |
intervalGRaverage |
Calculates the growth rates for a specified time interval by taking weighted averages of growth rates for times within the interval |
intervalGRdiff |
Calculates the growth rates for a specified time interval |
intervalPVA |
Selects a subset of variables using Principal Variable Analysis (PVA), based on the observed values within a specified time interval |
intervalPVA.data.frame |
Selects a subset of variables using Principal Variable Analysis (PVA), based on the observed values within a specified time interval |
intervalValueCalculate |
Calculates a single value that is a function of an individual's values for a response over a specified time interval |
intervalWUI |
Calculates water use indices (WUI) over a specified time interval to a data.frame |
longi.dat |
A small data set to use in function examples |
longi.prime.dat |
A small data set to use in function examples |
longiPlot |
Deprecated Functions in the Package asremlPlus |
longitudinalPrime |
Selects a set variables to be retained in a data frame of longitudinal data |
PGR |
Calculates growth rates (AGR, PGR, RGRdiff) between pairs of values in a vector |
plotAnom |
Identifies anomalous individuals and produces longitudinal plots without them and with just them |
plotCorrmatrix |
Calculates and plots correlation matrices for a set of responses |
plotDeviationsBoxes |
Produces boxplots of the deviations of the observed values from the smoothed values over values of x. |
plotImagetimes |
Plots the position of a time within an interval against the interval for each cart |
plotLongitudinal |
Plots longitudinal data for a set of indiividuals |
plotMedianDeviations |
Calculates and plots the median of the deviations of the smoothed values from the observed values. |
probeDF |
Compares, for a set of specified values of df, a response and the smooths of it, possibly along with growth rates calculated from the smooths |
probeSmoothing |
Compares, for a set of specified values of df and different smoothing methods, a response and the smooths of it, possibly along with growth rates calculated from the smooths |
PVA |
Selects a subset of variables using Principal Variable Analysis (PVA) |
PVA.data.frame |
Selects a subset of variables stored in a data.frame using Principal Variable Analysis (PVA) |
PVA.matrix |
Selects a subset of variables using Principal Variable Analysis (PVA) based on a correlation matrix |
raw.dat |
A small data set to use in function examples |
rcontrib |
Computes a measure of how correlated each variable in a set is with the other variable, conditional on a nominated subset of them |
rcontrib.data.frame |
Computes a measure of how correlated each variable in a set is with the other variable, conditional on a nominated subset of them |
rcontrib.matrix |
Computes a measure of how correlated each variable in a set is with the other variable, conditional on a nominated subset of them |
RGRdiff |
Calculates growth rates (AGR, PGR, RGRdiff) between pairs of values in a vector |
RiceRaw.dat |
Data for an experiment to investigate a rice germplasm panel |
splitContGRdiff |
Adds the growth rates calculated continuously over time for subsets of a response to a 'data.frame' |
splitSplines |
Adds the fits, and optionally growth rates computed from derivatives, after fitting natural cubic smoothing splines to subsets of a response to a 'data.frame' |
splitValueCalculate |
Calculates a single value that is a function of an individual's values for a response |
tomato.dat |
Longitudinal data for an experiment to investigate tomato response to mycorrhizal fungi and zinc |
twoLevelOpcreate |
Creates a data.frame formed by applying, for each response, a binary operation to the paired values of two different treatments |
WUI |
Calculates the Water Use Index (WUI) |