Transform Files to 'microtable' Object with 'microeco' Package

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Documentation for package ‘file2meco’ version 0.2.2

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check_match_table Replace the names use match table
check_sample_table Read sample table
CHOCOPhlAn_taxonomy The CHOCOPhlAn_taxonomy data
humann2meco Transform 'HUMAnN' metagenomic results to 'microtable' object.
meco2phyloseq Transform 'microtable' object of 'microeco' package to the 'phyloseq' object of 'phyloseq' package.
MetaCyc_pathway_map The MetaCyc_pathway_map data
metacyc_pathway_website Get the website for a 'MetaCyc' pathway name
mpa2meco Transform metagenomic classification results of 'mpa' format to 'microtable' object.
ncyc2meco Transform 'Ncyc' metagenomic abundance to 'microtable' object.
ncyc_map The ncyc_map data
phyloseq2meco Transform the 'phyloseq' object of 'phyloseq' package to 'microtable' object of 'microeco' package.
qiime1meco Transform 'QIIME' results to 'microtable' object.
qiime2meco Transform 'QIIME2' results to 'microtable' object.