manifest | Example Sample Manifest |
npx_data1 | NPX Data in Long format |
npx_data2 | NPX Data in Long format, Follow-up |
olink_anova | Function which performs an ANOVA per protein |
olink_anova_posthoc | Function which performs an ANOVA posthoc test per protein. |
olink_boxplot | Function which plots boxplots of selected variables |
olink_bridgeselector | Bridge selection function |
olink_color_discrete | Olink color scale for discrete ggplots |
olink_color_gradient | Olink color scale for continuous ggplots |
olink_displayPlateDistributions | Plot distributions of a given variable for all plates |
olink_displayPlateLayout | Plot all plates colored by a variable |
olink_dist_plot | Function to plot the NPX distribution by panel |
olink_fill_discrete | Olink fill scale for discrete ggplots |
olink_fill_gradient | Olink fill scale for continuous ggplots |
olink_lmer | Function which performs a linear mixed model per protein |
olink_lmer_plot | Function which performs a point-range plot per protein on a linear mixed model |
olink_lmer_posthoc | Function which performs a linear mixed model posthoc per protein. |
olink_normalization | Normalization of all proteins (by OlinkID). |
olink_pal | Olink color panel for plotting |
olink_pca_plot | Function to plot a PCA of the data |
olink_plate_randomizer | Randomly assign samples to plates |
olink_qc_plot | Function to plot an overview of a sample cohort per Panel |
olink_ttest | Function which performs a t-test per protein |
olink_volcano_plot | Easy volcano plot with Olink theme |
read_NPX | Function to read NPX data into long format |
set_plot_theme | Function to set plot theme |