ESEA: Discovering the Dysregulated Pathways based on Edge Set Enrichment Analysis


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Documentation for package ‘ESEA’ version 1.0

Help Pages

calEdgeCorScore Calculate the differential correlation score for edges
class.labels The example data in the environment variable of the system
controlcharactor The example data in the environment variable of the system
dataset The example data in the environment variable of the system
EdgesBackgrandData The data for the background set of edges
envData The variables in the environment variable 'envData' of the system
ESEA.Main Identify dysregulated pathways based on edge set enrichment analysis
GetEdgesBackgrandData Get the data for background set of edges
GetExampleData Get the example data
GetPathwayEdgeData Get the edge sets of pathways
PathwayEdgeData The edge sets of pathways
PlotGlobEdgeCorProfile Plot global edge correlation profile
PlotPathwayGraph Plot the pathway-result network diagram
PlotRunEnrichment Plot running Edge enrichment score
Results The example data in the environment variable of the system
SavePathway2File Save a pathway-result network to a file which can be input to the Cytoscape software