add_col_topic	add_col_topic
animal_keywords	animal_keywords
assign_topic	assign_topic
assign_topic_lda	assign_topic_lda
biomarker_keywords	biomarker_keywords
calculate_score_animals	calculate_score_animals
calculate_score_biomarker	calculate_score_biomarker
calculate_score_patients	calculate_score_patients
calculate_score_topic	calculate_score_topic
combine_df	combine_df
combine_mir	combine_mir
combine_stopwords	combine_stopwords
compare_mir_count	compare_mir_count
compare_mir_count_log2	compare_mir_count_log2
compare_mir_count_unique	compare_mir_count_unique
compare_mir_terms	compare_mir_terms
compare_mir_terms_log2	compare_mir_terms_log2
compare_mir_terms_scatter	compare_mir_terms_scatter
compare_mir_terms_unique	compare_mir_terms_unique
count_mir	count_mir
count_mir_threshold	count_mir_threshold
count_snp	count_snp
count_target	count_target
df_crc	df_crc
df_mirtarbase	df_mirtarbase
df_panc	df_panc
df_test	df_test
extract_mir_df	extract_mir_df
extract_mir_string	extract_mir_string
extract_snp	extract_snp
fit_lda	fit_lda
generate_stopwords	generate_stopwords
get_distinct_mir_df	get_distinct_mir_df
get_distinct_mir_vec	get_distinct_mir_vec
get_mir	get_mir
get_pmid	get_pmid
get_shared_mir_df	get_shared_mir_df
get_shared_mir_vec	get_shared_mir_vec
get_snp	get_snp
indicate_mir	indicate_mir
indicate_term	indicate_term
join_mirtarbase	join_mirtarbase
join_targets	join_targets
ngram_stopwords	ngram_stopwords
patients_keywords	patients_keywords
plot_lda_term	plot_lda_term
plot_mir_count	plot_mir_count
plot_mir_count_threshold	plot_mir_count_threshold
plot_mir_development	plot_mir_development
plot_mir_new	plot_mir_new
plot_mir_terms	plot_mir_terms
plot_perplexity	plot_perplexity
plot_score_animals	plot_score_animals
plot_score_biomarker	plot_score_biomarker
plot_score_patients	plot_score_patients
plot_score_topic	plot_score_topic
plot_target_count	plot_target_count
plot_target_mir_scatter	plot_target_mir_scatter
plot_wordcloud	plot_wordcloud
read_pubmed	read_pubmed
read_pubmed_jats	read_pubmed_jats
save_excel	save_excel
save_plot	save_plot
stopwords_2gram	stopwords_2gram
stopwords_miretrieve	stopwords_miretrieve
stopwords_pubmed	stopwords_pubmed
subset_df	subset_df
subset_mir	subset_mir
subset_mir_threshold	subset_mir_threshold
subset_research	subset_research
subset_review	subset_review
subset_snp	subset_snp
subset_year	subset_year
