# Transition Network Analysis (TNA)

## Documentation for package ‘tna’ version 0.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

A B C D E F G H M P R S T

tna-package | The 'tna' package.

## -- A --

as.igraph.group_tna | Coerce a specific group from a 'group_tna' object to an 'igraph' object.
as.igraph.matrix | Coerce a weight matrix to an 'igraph' object.
as.igraph.tna | Coerce a 'tna' object to an 'igraph' object.

## -- B --

betweenness_network | Build and Visualize a Network with Edge Betweenness
betweenness_network.tna | Build and Visualize a Network with Edge Betweenness
bootstrap | Bootstrap Transition Networks from Sequence Data
bootstrap.group_tna | Bootstrap Transition Networks from Sequence Data
bootstrap.tna | Bootstrap Transition Networks from Sequence Data
build_model | Build a Transition Network Analysis Model
build_model.data.frame | Build a Transition Network Analysis Model
build_model.default | Build a Transition Network Analysis Model
build_model.matrix | Build a Transition Network Analysis Model
build_model.stslist | Build a Transition Network Analysis Model
build_model.tna_data | Build a Transition Network Analysis Model

## -- C --

centralities | Calculate Centrality Measures for a Transition Matrix
centralities.group_tna | Calculate Centrality Measures for a Transition Matrix
centralities.matrix | Calculate Centrality Measures for a Transition Matrix
centralities.tna | Calculate Centrality Measures for a Transition Matrix
cliques | Identify Cliques in a Transition Network
cliques.group_tna | Identify Cliques in a Transition Network
cliques.tna | Identify Cliques in a Transition Network
communities | Community Detection for Transition Networks
communities.group_tna | Community Detection for Transition Networks
communities.tna | Community Detection for Transition Networks
compare | Compare Two Matrices or TNA Models with Comprehensive Metrics
compare.group_tna | Compare TNA Clusters with Comprehensive Metrics
compare.matrix | Compare Two Matrices or TNA Models with Comprehensive Metrics
compare.tna | Compare Two Matrices or TNA Models with Comprehensive Metrics
ctna | Build a Transition Network Analysis Model

## -- D --

deprune | Restore a Pruned Transition Network Analysis Model
deprune.group_tna | Restore a Pruned Transition Network Analysis Model
deprune.tna | Restore a Pruned Transition Network Analysis Model

## -- E --

engagement | Example data on student engagement
engagement_mmm | Example mixed Markov model fitted to the 'engagement' data
estimate_centrality_stability | Estimate Centrality Stability
estimate_centrality_stability.group_tna | Estimate Centrality Stability
estimate_centrality_stability.tna | Estimate Centrality Stability
estimate_cs | Estimate Centrality Stability
estimate_cs.group_tna | Estimate Centrality Stability
estimate_cs.tna | Estimate Centrality Stability

## -- F --

ftna | Build a Transition Network Analysis Model

## -- G --

group_ctna | Build a grouped Transition Network Analysis Model
group_ftna | Build a grouped Transition Network Analysis Model
group_model | Build a grouped Transition Network Analysis Model
group_model.default | Build a grouped Transition Network Analysis Model
group_model.mhmm | Build a grouped Transition Network Analysis Model
group_regulation | Example data on group regulation
group_tna | Build a grouped Transition Network Analysis Model

## -- H --

hist.group_tna | Plot a Histogram of Edge Weights for a 'group_tna' Object.
hist.tna | Plot a Histogram of Edge Weights in the Network

## -- M --

mmm_stats | Retrieve statistics from a mixture Markov model (MMM)

## -- P --

permutation_test | Compare Two Networks from Sequence Data Using Permutation Tests
plot.group_tna | Plot a grouped Transition Network Analysis Model
plot.group_tna_centralities | Plot Centrality Measures
plot.group_tna_cliques | Plot Found Cliques
plot.group_tna_communities | Plot Found Communities
plot.group_tna_stability | Plot Centrality Stability Results
plot.tna | Plot a Transition Network Analysis Model
plot.tna_centralities | Plot Centrality Measures
plot.tna_cliques | Plot Cliques of a TNA Network
plot.tna_communities | Plot Communities
plot.tna_comparison | Plot the results of comparing two 'tna' models or matrices
plot.tna_permutation | Plot the Significant Differences from a Permutation Test
plot.tna_stability | Plot Centrality Stability Results
plot_compare | Plot the difference network between two models
plot_compare.group_tna | Plot the difference network between two clusters
plot_compare.tna | Plot the difference network between two models
plot_mosaic | Create a mosaic plot of transitions
plot_mosaic.group_tna | Plot state frequencies as a mosaic between two groups
plot_mosaic.tna | Create a mosaic plot of transitions
plot_mosaic.tna_data | Plot state frequencies as a mosaic between two groups
prepare_data | Compute User Sessions from Event Data
print.group_tna | Print a 'group_tna' Object
print.group_tna_bootstrap | Print 'group_tna' Bootstrap Results
print.group_tna_centralities | Print Centrality Measures
print.group_tna_cliques | Print Found Cliques
print.group_tna_communities | Print Detected Communities
print.group_tna_stability | Print Centrality Stability Results
print.summary.group_tna | Print the summary of a grouped Transition Network Analysis Model
print.summary.group_tna_bootstrap | Print Bootstrap Summary for a Grouped Transition Network
print.summary.tna | Print a TNA Summary
print.summary.tna_bootstrap | Print Bootstrap Summary
print.tna | Print a 'tna' object
print.tna_bootstrap | Print Bootstrap Results
print.tna_centralities | Print Centrality Measures
print.tna_cliques | Print Found Cliques of a TNA Network
print.tna_communities | Print Detected Communities
print.tna_comparison | Print Comparison Results
print.tna_data | Print a TNA data object
print.tna_permutation | Print Permutation Test Results
print.tna_stability | Print Centrality Stability Results
prune | Prune a 'tna' network based on transition probabilities
prune.group_tna | Prune a 'tna' network based on transition probabilities
prune.tna | Prune a 'tna' network based on transition probabilities
pruning_details | Print Detailed Information on the Pruning Results
pruning_details.group_tna | Print Detailed Information on the Pruning Results
pruning_details.tna | Print Detailed Information on the Pruning Results

## -- R --

rename_groups | Rename clusters
reprune | Restore Previous Pruning of a Transition Network Analysis Model
reprune.group_tna | Restore Previous Pruning of a Transition Network Analysis Model
reprune.tna | Restore a Pruned Transition Network Analysis Model

## -- S --

summary.group_tna | Calculate Summary of Network Metrics for a grouped Transition Network
summary.group_tna_bootstrap | Summarize Bootstrap Results for a Grouped Transition Network
summary.tna | Calculate Summary of Network Metrics for a Transition Network
summary.tna_bootstrap | Summarize Bootstrap Results

## -- T --

tna | Build a Transition Network Analysis Model