calc_pvalues_network | Calculate the p values for specific category network samples |
calc_pvalues_percentile | Compute interaction p values for a single percentile value |
get_diffNetworks | Generate multi-omic differential networks |
get_diffNetworks_singleOmic | Generate differential networks for single omic analysis |
get_multiOmics_diffNetworks | Get a table of all significant interactions across categories |
get_sig_deggs | Get a table of all the significant interactions across categories |
my_palette | Internal function for colors |
node_boxplot | Boxplots of single nodes (genes,proteins, etc.) |
plot_regressions | Plot differential regressions for a link |
synthetic_metadata | Synthetic clinical data |
synthetic_OlinkData | Synthetic RNA-seq count data |
synthetic_proteomicData | Synthetic RNA-seq count data |
synthetic_rnaseqData | Synthetic RNA-seq count data |
tidy_metadata | Tidying up of metadata. Samples belonging to undesidered categories (if specified) will be removed as well as categories with less than five samples, and NAs. |
View_diffNetworks | Interactive visualisation of differential networks |