CRAN Package Check Results for Package gimap

Last updated on 2025-02-21 05:50:44 CET.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	1.0.1	7.34	78.88	86.22	ERROR
r-devel-linux-x86_64-debian-gcc	1.0.2	4.81	57.41	62.22	ERROR
r-devel-linux-x86_64-fedora-clang	1.0.2			141.75	OK
r-devel-linux-x86_64-fedora-gcc	1.0.2			162.71	OK
r-devel-macos-arm64	1.0.1			45.00	OK
r-devel-macos-x86_64	1.0.2			150.00	OK
r-devel-windows-x86_64	1.0.1	12.00	106.00	118.00	OK
r-patched-linux-x86_64	1.0.1	8.26	75.52	83.78	ERROR
r-release-linux-x86_64	1.0.2	7.74	74.94	82.68	ERROR
r-release-macos-arm64	1.0.1			68.00	OK
r-release-macos-x86_64	1.0.2			107.00	OK
r-release-windows-x86_64	1.0.2	9.00	101.00	110.00	OK
r-oldrel-macos-x86_64	1.0.2			123.00	OK
r-oldrel-windows-x86_64	1.0.2	13.00	116.00	129.00	OK

Additional issues

rlibro

Check Details

Version: 1.0.1
Check: examples
Result: ERROR Running examples in ‘gimap-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: setup_data > ### Title: Making a new gimap dataset > ### Aliases: setup_data > > ### ** Examples > > > counts <- get_example_data("count") %>% + dplyr::select(c( + "Day00_RepA", "Day05_RepA", "Day22_RepA", "Day22_RepB", + "Day22_RepC" + )) %>% + as.matrix() Downloading: 1.4 kB Downloading: 1.4 kB Downloading: 1.4 kB Downloading: 1.4 kB Downloading: PP_pgPEN_HeLa_counts.txt | | | 0% | |======================================================================| 100% | | | 0% | | | 1% | |= | 2% | |== | 3% | |=== | 4% | |==== | 6% | |======= | 9% | |========= | 13% | |============ | 17% | |============== | 20% | |================ | 22% | |================= | 24% | |================== | 25% | |================== | 26% | |=================== | 27% | |==================== | 28% | |===================== | 30% | |====================== | 31% | |====================== | 32% | |======================= | 32% | |======================= | 33% | |======================== | 34% | |======================== | 35% | |========================= | 35% | |=========================== | 39% | |============================== | 43% | |================================= | 47% | |=================================== | 50% | |====================================== | 54% | |======================================= | 56% | |========================================= | 58% | |========================================== | 60% | |=========================================== | 61% | |=========================================== | 62% | |============================================ | 62% | |============================================ | 63% | |============================================= | 64% | |============================================== | 65% | |============================================== | 66% | |=============================================== | 67% | |=============================================== | 68% | |================================================ | 68% | |================================================ | 69% | |================================================= | 70% | |================================================== | 71% | |================================================== | 72% | |=================================================== | 72% | |=================================================== | 73% | |==================================================== | 74% | |===================================================== | 75% | |===================================================== | 76% | |====================================================== | 77% | |======================================================= | 78% | |======================================================= | 79% | |======================================================== | 80% | |======================================================== | 81% | |========================================================= | 81% | |=========================================================== | 85% | |============================================================== | 89% | |================================================================ | 92% | |=================================================================== | 96% | |======================================================================| 100% Warning in file(con, "w") : cannot open file '/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/gimap/extdata/PP_pgPEN_HeLa_counts.txt': Read-only file system Error in file(con, "w") : cannot open the connection Calls: %>% ... get_example_data -> get_figshare -> writeLines -> file Execution halted Examples with CPU (user + system) or elapsed time > 5s user system elapsed run_qc 5.885 0.101 8.4 Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.0.2
Check: examples
Result: ERROR Running examples in ‘gimap-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: setup_data > ### Title: Making a new gimap dataset > ### Aliases: setup_data > > ### ** Examples > > > counts <- get_example_data("count") %>% + dplyr::select(c( + "Day00_RepA", "Day05_RepA", "Day22_RepA", "Day22_RepB", + "Day22_RepC" + )) %>% + as.matrix() Downloading: 1.4 kB Downloading: 1.4 kB Downloading: 1.4 kB Downloading: 1.4 kB Downloading: PP_pgPEN_HeLa_counts.txt | | | 0% | |======================================================================| 100% | | | 0% | | | 1% | |= | 1% | |= | 2% | |== | 3% | |=== | 4% | |==== | 5% | |==== | 6% | |===== | 7% | |====== | 8% | |====== | 9% | |======= | 10% | |========= | 13% | |========== | 14% | |========== | 15% | |============= | 18% | |================ | 22% | |================== | 26% | |===================== | 30% | |===================== | 31% | |====================== | 31% | |====================== | 32% | |======================= | 33% | |======================== | 35% | |========================= | 35% | |========================= | 36% | |========================== | 37% | |=========================== | 38% | |=========================== | 39% | |============================ | 40% | |============================ | 41% | |============================= | 41% | |============================= | 42% | |================================ | 46% | |=================================== | 50% | |===================================== | 52% | |===================================== | 54% | |====================================== | 55% | |======================================= | 56% | |======================================== | 57% | |======================================== | 58% | |========================================= | 58% | |========================================== | 60% | |=========================================== | 61% | |=========================================== | 62% | |============================================ | 63% | |============================================= | 64% | |============================================== | 65% | |=============================================== | 66% | |================================================= | 70% | |==================================================== | 74% | |======================================================= | 78% | |========================================================= | 81% | |============================================================ | 85% | |============================================================== | 89% | |================================================================= | 93% | |=================================================================== | 96% | |======================================================================| 100% Warning in file(con, "w") : cannot open file '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/gimap/extdata/PP_pgPEN_HeLa_counts.txt': Read-only file system Error in file(con, "w") : cannot open the connection Calls: %>% ... get_example_data -> get_figshare -> writeLines -> file Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.1
Check: examples
Result: ERROR Running examples in ‘gimap-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: setup_data > ### Title: Making a new gimap dataset > ### Aliases: setup_data > > ### ** Examples > > > counts <- get_example_data("count") %>% + dplyr::select(c( + "Day00_RepA", "Day05_RepA", "Day22_RepA", "Day22_RepB", + "Day22_RepC" + )) %>% + as.matrix() Downloading: 1.4 kB Downloading: 1.4 kB Downloading: 1.4 kB Downloading: 1.4 kB Downloading: PP_pgPEN_HeLa_counts.txt | | | 0% | |======================================================================| 100% | | | 0% | | | 1% | |= | 2% | |== | 3% | |===== | 6% | |======= | 11% | |========== | 14% | |========== | 15% | |============= | 19% | |=============== | 22% | |================== | 26% | |===================== | 30% | |====================== | 31% | |====================== | 32% | |======================= | 33% | |======================== | 34% | |======================== | 35% | |========================= | 36% | |========================== | 37% | |========================== | 38% | |=========================== | 38% | |=========================== | 39% | |============================ | 40% | |============================= | 41% | |============================= | 42% | |============================== | 42% | |============================== | 43% | |=============================== | 44% | |================================== | 48% | |==================================== | 52% | |======================================= | 56% | |========================================== | 59% | |============================================ | 63% | |=============================================== | 67% | |================================================ | 69% | |================================================= | 70% | |================================================== | 72% | |=================================================== | 73% | |==================================================== | 74% | |==================================================== | 75% | |===================================================== | 76% | |====================================================== | 78% | |======================================================= | 78% | |======================================================== | 80% | |========================================================= | 81% | |========================================================== | 82% | |=========================================================== | 84% | |=========================================================== | 85% | |============================================================ | 86% | |============================================================= | 87% | |============================================================== | 88% | |============================================================== | 89% | |=============================================================== | 90% | |================================================================ | 91% | |================================================================= | 93% | |================================================================== | 94% | |======================================================================| 100% Warning in file(con, "w") : cannot open file '/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/gimap/extdata/PP_pgPEN_HeLa_counts.txt': Read-only file system Error in file(con, "w") : cannot open the connection Calls: %>% ... get_example_data -> get_figshare -> writeLines -> file Execution halted Flavor: r-patched-linux-x86_64

Version: 1.0.2
Check: examples
Result: ERROR Running examples in ‘gimap-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: setup_data > ### Title: Making a new gimap dataset > ### Aliases: setup_data > > ### ** Examples > > > counts <- get_example_data("count") %>% + dplyr::select(c( + "Day00_RepA", "Day05_RepA", "Day22_RepA", "Day22_RepB", + "Day22_RepC" + )) %>% + as.matrix() Downloading: 1.4 kB Downloading: 1.4 kB Downloading: 1.4 kB Downloading: 1.4 kB Downloading: PP_pgPEN_HeLa_counts.txt | | | 0% | |======================================================================| 100% | | | 0% | | | 1% | |= | 1% | |== | 3% | |=== | 5% | |===== | 7% | |======== | 11% | |========== | 14% | |========== | 15% | |=========== | 16% | |============ | 18% | |============== | 20% | |=============== | 21% | |================ | 22% | |================ | 23% | |================= | 24% | |================== | 26% | |=================== | 27% | |==================== | 28% | |===================== | 30% | |===================== | 31% | |======================== | 35% | |=========================== | 38% | |============================= | 42% | |================================ | 45% | |=================================== | 49% | |===================================== | 53% | |======================================== | 57% | |========================================== | 60% | |============================================ | 62% | |============================================ | 63% | |============================================== | 65% | |=============================================== | 67% | |=============================================== | 68% | |================================================ | 69% | |================================================= | 71% | |================================================== | 72% | |=================================================== | 73% | |==================================================== | 74% | |==================================================== | 75% | |===================================================== | 76% | |====================================================== | 77% | |======================================================= | 79% | |======================================================== | 79% | |======================================================== | 81% | |=========================================================== | 85% | |============================================================== | 88% | |================================================================= | 92% | |=================================================================== | 96% | |======================================================================| 100% Warning in file(con, "w") : cannot open file '/home/hornik/tmp/R.check/r-release-gcc/Work/build/Packages/gimap/extdata/PP_pgPEN_HeLa_counts.txt': Read-only file system Error in file(con, "w") : cannot open the connection Calls: %>% ... get_example_data -> get_figshare -> writeLines -> file Execution halted Flavor: r-release-linux-x86_64