Last updated on 2024-11-29 03:50:21 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.7.2 | 12.81 | 224.37 | 237.18 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.0.0 | 10.10 | 228.80 | 238.90 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.0.0 | 560.03 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.0.0 | 567.29 | OK | |||
| r-devel-windows-x86_64 | 2.0.0 | 15.00 | 300.00 | 315.00 | OK | |
| r-patched-linux-x86_64 | 1.7.2 | 13.92 | 244.06 | 257.98 | ERROR | |
| r-release-linux-x86_64 | 1.7.2 | 11.30 | 239.89 | 251.19 | OK | |
| r-release-macos-arm64 | 2.0.0 | 54.00 | OK | |||
| r-release-macos-x86_64 | 2.0.0 | 128.00 | OK | |||
| r-release-windows-x86_64 | 2.0.0 | 15.00 | 300.00 | 315.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.0 | 54.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.0.0 | 119.00 | OK | |||
| r-oldrel-windows-x86_64 | 2.0.0 | 19.00 | 328.00 | 347.00 | OK |
Version: 1.7.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [159s/215s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(ggeffects)
> test_check("ggeffects")
Model has log transformed response. Predictions are on transformed
scale.
Data points may overlap. Use the `jitter` argument to add some amount of
random variation to the location of data points and avoid overplotting.
(Intercept) tensionM tensionH
36.38889 -10.00000 -14.72222
Not all rows are shown in the output. Use `print(..., n = Inf)` to show
all rows.
Not all rows are shown in the output. Use `print(..., n = Inf)` to show
all rows.
NOTE: Results may be misleading due to involvement in interactions
NOTE: Results may be misleading due to involvement in interactions
Data points may overlap. Use the `jitter` argument to add some amount of
random variation to the location of data points and avoid overplotting.
Data points may overlap. Use the `jitter` argument to add some amount of
random variation to the location of data points and avoid overplotting.
Data points may overlap. Use the `jitter` argument to add some amount of
random variation to the location of data points and avoid overplotting.
Data points may overlap. Use the `jitter` argument to add some amount of
random variation to the location of data points and avoid overplotting.
Re-fitting to get Hessian
Re-fitting to get Hessian
Model contains splines or polynomial terms. Consider using `terms="mined
[all]"` to get smooth plots. See also package-vignette 'Adjusted
Predictions at Specific Values'.
Model contains splines or polynomial terms. Consider using `terms="cover
[all]"` to get smooth plots. See also package-vignette 'Adjusted
Predictions at Specific Values'.
Model contains splines or polynomial terms. Consider using `terms="mined
[all]"` to get smooth plots. See also package-vignette 'Adjusted
Predictions at Specific Values'.
Model contains splines or polynomial terms. Consider using `terms="cover
[all]"` to get smooth plots. See also package-vignette 'Adjusted
Predictions at Specific Values'.
Can't compute adjusted predictions, `effects::Effect()` returned an error.
Reason: Invalid operation on a survival time
You may try `ggpredict()` or `ggemmeans()`.
Can't compute adjusted predictions, `effects::Effect()` returned an error.
Reason: non-conformable arguments
You may try `ggpredict()` or `ggemmeans()`.
[ FAIL 6 | WARN 1 | SKIP 63 | PASS 653 ]
══ Skipped tests (63) ══════════════════════════════════════════════════════════
• On CRAN (55): 'test-MCMCglmm.R:1:1', 'test-MixMod.R:1:1',
'test-avg_predictions.R:24:3', 'test-avg_predictions.R:79:5',
'test-backtransform_response.R:76:5', 'test-bias_correction.R:1:1',
'test-brms-categ-cum.R:1:1', 'test-brms-monotonic.R:1:1',
'test-brms-ppd.R:1:1', 'test-brms-trial.R:1:1', 'test-clean_vars.R:1:1',
'test-clm.R:1:1', 'test-clm2.R:1:1', 'test-clmm.R:1:1',
'test-correct_se_sorting.R:1:1', 'test-decimals.R:1:1', 'test-fixest.R:1:1',
'test-focal_only_random.R:1:1', 'test-format.R:1:1', 'test-gamlss.R:1:1',
'test-gamm4.R:1:1', 'test-glmer.R:2:1', 'test-glmmTMB.R:1:1',
'test-interval_re.R:1:1', 'test-ivreg.R:1:1',
'test-johnson_neyman_numcat.R:1:1', 'test-list_terms.R:36:3',
'test-lmer.R:1:1', 'test-mgcv.R:1:1', 'test-plot-ordinal-latent.R:1:1',
'test-plot.R:69:1', 'test-polr.R:21:7', 'test-polr.R:60:7',
'test-pool_comparisons.R:1:1', 'test-print.R:1:1', 'test-print_digits.R:1:1',
'test-print_md.R:1:1', 'test-print_zero_inflation.R:1:1',
'test-resid_over_grid.R:33:5', 'test-rstanarm-ppd.R:1:1',
'test-rstanarm.R:1:1', 'test-sdmTMB.R:1:1', 'test-simulate.R:1:1',
'test-test_predictions-margin.R:1:1', 'test-test_predictions-mixed.R:1:1',
'test-test_predictions_emmeans.R:133:3',
'test-test_predictions_emmeans.R:168:3',
'test-test_predictions_ggeffects.R:140:3',
'test-test_predictions_ggeffects.R:172:3',
'test-test_predictions_ggeffects.R:181:3',
'test-test_predictions_ggeffects.R:224:5', 'test-vcov.R:1:1',
'test-vglm.R:1:1', 'test-zeroinfl.R:27:3', 'test-zi_prob.R:1:1'
• On Linux (5): 'test-ordinal.R:1:1', 'test-parsnip.R:94:3',
'test-print_subsets.R:1:1', 'test-print_test_predictions-ordinal.R:1:1',
'test-print_test_predictions.R:1:1'
• empty test (3): 'test-plot.R:8:1', 'test-polr.R:136:5', 'test-polr.R:142:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-test_predictions.R:157:3'): test_predictions, categorical, pairwise ──
out$Contrast (`actual`) not equal to c(...) (`expected`).
actual | expected
[1] -0.2051 - 0.4199 [1]
[2] 0.0666 - -0.2051 [2]
[3] 0.4199 - -0.1528 [3]
[4] -0.1528 - 0.0666 [4]
[5] 0.1187 | 0.1187 [5]
[6] 0.2718 - -0.6251 [6]
[7] 0.6251 - -0.5727 [7]
[8] 0.0524 - -0.3533 [8]
[9] 0.3239 - -0.3012 [9]
[10] 0.3533 - 0.0524 [10]
... ... ... and 5 more ...
── Failure ('test-test_predictions.R:166:3'): test_predictions, categorical, pairwise ──
out$groups (`actual`) not identical to c(...) (`expected`).
actual | expected
[1] "control-control" - "control-treatment" [1]
[2] "control-control" | "control-control" [2]
[3] "control-treatment" | "control-treatment" [3]
[4] "control-treatment" - "control-control" [4]
[5] "control-treatment" | "control-treatment" [5]
[6] "control-control" - "treatment-control" [6]
[7] "control-treatment" - "treatment-treatment" [7]
[8] "control-treatment" - "treatment-control" [8]
[9] "control-treatment" - "treatment-treatment" [9]
[10] "control-treatment" | "control-treatment" [10]
... ... ... and 5 more ...
── Failure ('test-test_predictions.R:176:3'): test_predictions, categorical, pairwise ──
out$episode (`actual`) not identical to c(...) (`expected`).
actual | expected
[1] "1-2" - "1-1" [1]
[2] "1-3" - "1-2" [2]
[3] "1-1" - "1-2" [3]
[4] "1-2" - "1-3" [4]
[5] "1-3" | "1-3" [5]
[6] "2-3" - "1-2" [6]
[7] "2-1" - "1-2" [7]
[8] "2-2" - "1-3" [8]
[9] "2-3" - "1-3" [9]
[10] "3-1" - "2-2" [10]
... ... ... and 5 more ...
── Failure ('test-test_predictions.R:311:3'): test_predictions, works with glmmTMB and w/o vcov ──
out1$Contrast (`actual`) not equal to c(0.06846, -0.87857, -0.79452, 0.30375, 1.48621) (`expected`).
`actual`: 0.304 0.827 -0.879 -0.228 -0.101
`expected`: 0.068 -0.879 -0.795 0.304 1.486
── Failure ('test-test_predictions.R:312:3'): test_predictions, works with glmmTMB and w/o vcov ──
out1$conf.low (`actual`) not equal to c(0.06846, -0.87857, -0.79452, 0.30375, 1.48621) (`expected`).
`actual`: 0.304 0.827 -0.879 -0.228 NA
`expected`: 0.068 -0.879 -0.795 0.304 1.486
── Failure ('test-test_predictions_emmeans.R:119:3'): test_predictions, engine emmeans, glm binomial ──
out1$Contrast (`actual`) not equal to out2$Contrast[4] (`expected`).
`actual`: -0.152
`expected`: -0.068
[ FAIL 6 | WARN 1 | SKIP 63 | PASS 653 ]
Deleting unused snapshots:
• backtransform_response/show-data-back-transformed-true.svg
• brms-monotonic/plot-brms-monotonic.svg
• plot-ordinal-latent/clm-latent-false.svg
• plot-ordinal-latent/clm-latent-true.svg
• plot-ordinal-latent/polr-latent-false.svg
• plot-ordinal-latent/polr-latent-true.svg
• plot/collapse-random-effects-works-again.svg
• plot/colored-data-points-with-special-focal-terms.svg
• plot/simple-plot-bw.svg
• plot/simple-plot-categorical-bw.svg
• plot/simple-plot-categorical-ci-bands-as-dots.svg
• plot/simple-plot-categorical-grey-scale.svg
• plot/simple-plot-categorical-no-ci.svg
• plot/simple-plot-categorical-show-data-jitter.svg
• plot/simple-plot-categorical-show-data.svg
• plot/simple-plot-categorical.svg
• plot/simple-plot-ci-bands-as-dots.svg
• plot/simple-plot-grey-scale.svg
• plot/simple-plot-no-ci.svg
• plot/simple-plot-show-data-jitter.svg
• plot/simple-plot-show-data.svg
• plot/simple-plot.svg
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64