Last updated on 2024-05-17 03:58:19 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| ABCoptim | 12 | ||
| aphylo | 9 | 3 | |
| ergmito | 3 | 9 | |
| fmcmc | 12 | ||
| googlePublicData | 12 | ||
| netdiffuseR | 6 | 6 | |
| netplot | 1 | 11 | |
| rgexf | 12 | ||
| slurmR | 12 |
Current CRAN status: OK: 12
Current CRAN status: NOTE: 9, OK: 3
Version: 0.3-3
Check: Rd files
Result: NOTE
checkRd: (-1) aphylo-class.Rd:28: Lost braces; missing escapes or markup?
28 | \item{tip.type, node.type}{Integer vectors with values {0,1}. 0 denotes duplication node and 1 speciation node. This is used in \link{LogLike}.}
| ^
checkRd: (-1) raphylo.Rd:33: Lost braces; missing escapes or markup?
33 | \item{tip.type, node.type}{Integer vectors with values {0,1}. 0 denotes duplication node and 1 speciation node. This is used in \link{LogLike}.}
| ^
checkRd: (-1) sim_fun_on_tree.Rd:24: Lost braces; missing escapes or markup?
24 | \item{tip.type, node.type}{Integer vectors with values {0,1}. 0 denotes duplication node and 1 speciation node. This is used in \link{LogLike}.}
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64
Version: 0.3-3
Check: HTML version of manual
Result: NOTE
Found the following HTML validation problems:
mislabel.html:25:1 (mislabel.Rd:20): Warning: trimming empty <p>
raphylo.html:25:1 (raphylo.Rd:57): Warning: trimming empty <p>
sim_fun_on_tree.html:25:1 (sim_fun_on_tree.Rd:50): Warning: trimming empty <p>
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64
Current CRAN status: NOTE: 3, OK: 9
Version: 0.3-1
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
libs 4.2Mb
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: OK: 12
Current CRAN status: OK: 12
Current CRAN status: NOTE: 6, OK: 6
Version: 1.22.6
Flags: --no-vignettes
Check: installed package size
Result: NOTE
installed size is 5.8Mb
sub-directories of 1Mb or more:
doc 2.5Mb
libs 1.5Mb
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 1.22.6
Check: installed package size
Result: NOTE
installed size is 9.9Mb
sub-directories of 1Mb or more:
doc 2.5Mb
libs 5.5Mb
Flavors: r-release-macos-arm64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 1, OK: 11
Version: 0.2-0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘intergraph’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2-0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘base-and-grid.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/netplot.Rcheck/vign_test/netplot/vignettes/base-and-grid_files/figure-html/baseplot-1.png
576x480 pixels, 8 bits/pixel, 256 colors in palette
Reducing image to 8 bits/pixel, grayscale
Input IDAT size = 11267 bytes
Input file size = 12137 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10178
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10105
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10105
Output IDAT size = 10105 bytes (1162 bytes decrease)
Output file size = 10183 bytes (1954 bytes = 16.10% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/netplot.Rcheck/vign_test/netplot/vignettes/base-and-grid_files/figure-html/alltogether-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 50376 bytes
Input file size = 50526 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39287
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 39287
Output IDAT size = 39287 bytes (11089 bytes decrease)
Output file size = 39365 bytes (11161 bytes = 22.09% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/netplot.Rcheck/vign_test/netplot/vignettes/base-and-grid_files/figure-html/topright-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 52005 bytes
Input file size = 52155 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40995
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40995
Output IDAT size = 40995 bytes (11010 bytes decrease)
Output file size = 41073 bytes (11082 bytes = 21.25% decrease)
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/netplot.Rcheck/vign_test/netplot/vignettes/base-and-grid_files/figure-html/tilted-1.png
576x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 54721 bytes
Input file size = 54871 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 42398
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 42398
Output IDAT size = 42398 bytes (12323 bytes decrease)
Output file size = 42476 bytes (12395 bytes = 22.59% decrease)
--- finished re-building ‘base-and-grid.Rmd’
--- re-building ‘examples.Rmd’ using rmarkdown
** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/netplot.Rcheck/vign_test/netplot/vignettes/examples_files/figure-html/unnamed-chunk-3-1.png
672x672 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 208899 bytes
Input file size = 209277 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 163879
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 163879
Output IDAT size = 163879 bytes (45020 bytes decrease)
Output file size = 163957 bytes (45320 bytes = 21.66% decrease)
Quitting from lines 91-101 [unnamed-chunk-4] (examples.Rmd)
Error: processing vignette 'examples.Rmd' failed with diagnostics:
there is no package called 'intergraph'
--- failed re-building ‘examples.Rmd’
SUMMARY: processing the following file failed:
‘examples.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Current CRAN status: OK: 12
Current CRAN status: OK: 12