| augment_linelist |
Append summaries of outbreaker results to a linelist |
| filter_chain |
Filter chain by parameter threshold |
| get_accuracy |
Calculate the accuracy of outbreak reconstruction |
| get_consensus |
Get the consensus transmission tree |
| get_entropy |
Compute the entropy of transmission trees |
| get_Ri |
Compute case reproduction numbers (Ri) from outbreaker2 chains |
| get_si |
Compute the serial interval (si) from transmission trees |
| get_trees |
Extract posterior transmission trees |
| identify |
Replace integers in outbreaker2 output with unique identifiers |
| linelist |
Simulated linelist with group labels |
| out |
outbreaker2 toy dataset |
| sample.outbreaker_chains |
Sample rows from an outbreaker_chains object |
| ttable |
Compute the transmission contingency table |
![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)