Characterise Tables of an OMOP Common Data Model Instance

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Documentation for package ‘OmopSketch’ version 0.5.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

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databaseCharacteristics	Summarise Database Characteristics for OMOP CDM
mockOmopSketch	Creates a mock database to test OmopSketch package.
plotConceptSetCounts	Plot the concept counts of a summariseConceptSetCounts output.
plotInObservation	Create a ggplot2 plot from the output of summariseInObservation().
plotObservationPeriod	Create a plot from the output of summariseObservationPeriod().
plotRecordCount	Create a ggplot of the records' count trend.
shinyCharacteristics	Generate an interactive Shiny application that visualises the results obtained from the 'databaseCharacteristics()' function.
summariseClinicalRecords	Summarise an omop table from a cdm object. You will obtain information related to the number of records, number of subjects, whether the records are in observation, number of present domains and number of present concepts.
summariseConceptCounts	Summarise concept counts in patient-level data. Only concepts recorded during observation period are counted.
summariseConceptIdCounts	Summarise concept use in patient-level data. Only concepts recorded during observation period are counted.
summariseConceptSetCounts	Summarise concept counts in patient-level data. Only concepts recorded during observation period are counted.
summariseInObservation	Summarise the number of people in observation during a specific interval of time.
summariseMissingData	Summarise missing data in omop tables
summariseObservationPeriod	Summarise the observation period table getting some overall statistics in a summarised_result object.
summariseOmopSnapshot	Summarise a cdm_reference object creating a snapshot with the metadata of the cdm_reference object.
summariseRecordCount	Summarise record counts of an omop_table using a specific time interval. Only records that fall within the observation period are considered.
tableClinicalRecords	Create a visual table from a summariseClinicalRecord() output.
tableConceptIdCounts	Create a visual table from a summariseConceptIdCounts() result.
tableInObservation	Create a visual table from a summariseInObservation() result.
tableMissingData	Create a visual table from a summariseMissingData() result.
tableObservationPeriod	Create a visual table from a summariseObservationPeriod() result.
tableOmopSnapshot	Create a visual table from a summarise_omop_snapshot result.
tableRecordCount	Create a visual table from a summariseRecordCount() result.
tableTopConceptCounts	Create a visual table of the most common concepts from 'summariseConceptIdCounts()' output. This function takes a 'summarised_result' object and generates a formatted table highlighting the most frequent concepts.